Basic Information:

  VIRBase ID:  

VHID00343141

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART12:  MIMAT0003423          SLC33A1:  NM_001363883     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART12	SLC33A1
miRBase Accession/Entrez ID	MIMAT0003423	9197
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ACATN//AT-1//AT1//CCHLND//SPG42

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC33A1	chr3:155568584(-) A-I      intronic chr3:155559643(-) A-I      intronic chr3:155568530(-) A-I      intronic chr3:155559648(-) A-I      intronic chr3:155568581(-) A-I      intronic chr3:155555927(-) A-I      intronic chr3:155555848(-) A-I      intronic chr3:155550922(-) A-I      intronic chr3:155550866(-) A-I      intronic chr3:155566929(-) A-I      intronic chr3:155570055(-) A-I      intronic chr3:155570001(-) A-I      intronic chr3:155570000(-) A-I      intronic chr3:155569049(-) A-I      intronic chr3:155569021(-) A-I      intronic chr3:155568997(-) A-I      intronic chr3:155568930(-) A-I      intronic chr3:155568893(-) A-I      intronic chr3:155568576(-) A-I      intronic chr3:155567855(-) A-I      intronic chr3:155567645(-) A-I      intronic chr3:155567615(-) A-I      intronic chr3:155567578(-) A-I      intronic chr3:155567540(-) A-I      intronic chr3:155567505(-) A-I      intronic chr3:155566971(-) A-I      intronic chr3:155566923(-) A-I      intronic chr3:155566362(-) A-I      intronic chr3:155566027(-) A-I      intronic chr3:155564991(-) A-I      intronic chr3:155564971(-) A-I      intronic chr3:155564888(-) A-I      intronic chr3:155564885(-) A-I      intronic chr3:155564474(-) A-I      intronic chr3:155564435(-) A-I      intronic chr3:155564389(-) A-I      intronic chr3:155564315(-) A-I      intronic chr3:155563208(-) A-I      intronic chr3:155562405(-) A-I      intronic chr3:155562331(-) A-I      intronic chr3:155560783(-) A-I      intronic chr3:155560776(-) A-I      intronic chr3:155560641(-) A-I      intronic chr3:155560535(-) A-I      intronic chr3:155559818(-) A-I      intronic chr3:155559810(-) A-I      intronic chr3:155559809(-) A-I      intronic chr3:155559774(-) A-I      intronic chr3:155559756(-) A-I      intronic chr3:155559755(-) A-I      intronic chr3:155559629(-) A-I      intronic chr3:155559073(-) A-I      intronic chr3:155559027(-) A-I      intronic chr3:155558975(-) A-I      intronic chr3:155558923(-) A-I      intronic chr3:155558722(-) A-I      intronic chr3:155558602(-) A-I      intronic chr3:155558590(-) A-I      intronic chr3:155558540(-) A-I      intronic chr3:155558534(-) A-I      intronic chr3:155558503(-) A-I      intronic chr3:155558459(-) A-I      intronic chr3:155558344(-) A-I      intronic chr3:155558015(-) A-I      intronic chr3:155557615(-) A-I      intronic chr3:155557534(-) A-I      intronic chr3:155557519(-) A-I      intronic chr3:155557008(-) A-I      intronic chr3:155556912(-) A-I      intronic chr3:155556910(-) A-I      intronic chr3:155556875(-) A-I      intronic chr3:155556595(-) A-I      intronic chr3:155556304(-) A-I      intronic chr3:155556298(-) A-I      intronic chr3:155556032(-) A-I      intronic chr3:155556007(-) A-I      intronic chr3:155555983(-) A-I      intronic chr3:155555980(-) A-I      intronic chr3:155555930(-) A-I      intronic chr3:155568953(-) A-I      intronic chr3:155558564(-) A-I      intronic chr3:155568992(-) A-I      intronic chr3:155568858(-) A-I      intronic chr3:155568679(-) A-I      intronic chr3:155559783(-) A-I      intronic chr3:155567572(-) A-I      intronic chr3:155569161(-) A-I      intronic chr3:155562489(-) A-I      intronic chr3:155567974(-) A-I      intronic chr3:155568077(-) A-I      intronic chr3:155564436(-) A-I      intronic chr3:155566764(-) A-I      intronic chr3:155568768(-) A-I      intronic chr3:155559832(-) A-I      intronic chr3:155569101(-) A-I      intronic chr3:155568918(-) A-I      intronic chr3:155556833(-) A-I      intronic chr3:155562430(-) A-I      intronic chr3:155568678(-) A-I      intronic chr3:155560746(-) A-I      intronic chr3:155567452(-) A-I      intronic chr3:155560733(-) A-I      intronic chr3:155568811(-) A-I      intronic chr3:155566457(-) A-I      intronic chr3:155559529(-) A-I      intronic chr3:155554960(-) A-I      intronic chr3:155566228(-) A-I      intronic chr3:155566759(-) A-I      intronic chr3:155558362(-) A-I      intronic chr3:155559713(-) A-I      intronic chr3:155558279(-) A-I      intronic chr3:155568903(-) A-I      intronic chr3:155567962(-) A-I      intronic chr3:155557687(-) A-I      intronic chr3:155558149(-) A-I      intronic chr3:155559096(-) A-I      intronic chr3:155566882(-) A-I      intronic chr3:155567588(-) A-I      intronic chr3:155567559(-) A-I      intronic chr3:155568599(-) A-I      intronic chr3:155568776(-) A-I      intronic chr3:155566818(-) A-I      intronic chr3:155567968(-) A-I      intronic chr3:155567614(-) A-I      intronic chr3:155557911(-) A-I      intronic chr3:155559068(-) A-I      intronic chr3:155568673(-) A-I      intronic chr3:155568767(-) A-I      intronic chr3:155568986(-) A-I      intronic chr3:155555847(-) A-I      intronic chr3:155558014(-) A-I      intronic chr3:155566977(-) A-I      intronic chr3:155558101(-) A-I      intronic chr3:155566976(-) A-I      intronic chr3:155568909(-) A-I      intronic chr3:155566880(-) A-I      intronic chr3:155568789(-) A-I      intronic chr3:155568448(-) A-I      intronic chr3:155563262(-) A-I      intronic chr3:155567926(-) A-I      intronic chr3:155555944(-) A-I      intronic chr3:155559087(-) A-I      intronic chr3:155558917(-) A-I      intronic chr3:155568687(-) A-I      intronic chr3:155567440(-) A-I      intronic chr3:155558966(-) A-I      intronic chr3:155566215(-) A-I      intronic chr3:155568891(-) A-I      intronic chr3:155567437(-) A-I      intronic chr3:155566032(-) A-I      intronic chr3:155569488(-) A-I      intronic chr3:155560771(-) A-I      intronic chr3:155566840(-) A-I      intronic chr3:155568961(-) A-I      intronic chr3:155564383(-) A-I      intronic chr3:155567966(-) A-I      intronic chr3:155558584(-) A-I      intronic chr3:155567531(-) A-I      intronic chr3:155558005(-) A-I      intronic chr3:155554899(-) A-I      intronic chr3:155568573(-) A-I      intronic chr3:155559634(-) A-I      intronic chr3:155556587(-) A-I      intronic chr3:155556313(-) A-I      intronic chr3:155568570(-) A-I      intronic chr3:155566831(-) A-I      intronic chr3:155558491(-) A-I      intronic chr3:155567975(-) A-I      intronic chr3:155567922(-) A-I      intronic chr3:155549221(-) A-I      intronic chr3:155557625(-) A-I      intronic chr3:155559764(-) A-I      intronic chr3:155567610(-) A-I      intronic chr3:155568896(-) A-I      intronic chr3:155566883(-) A-I      intronic chr3:155568633(-) A-I      intronic chr3:155568788(-) A-I      intronic chr3:155566804(-) A-I      intronic chr3:155562475(-) A-I      intronic chr3:155558727(-) A-I      intronic chr3:155559091(-) A-I      intronic chr3:155565299(-) A-I      intronic chr3:155558969(-) A-I      intronic chr3:155558520(-) A-I      intronic chr3:155566408(-) A-I      intronic chr3:155558307(-) A-I      intronic chr3:155568544(-) A-I      intronic chr3:155562439(-) A-I      intronic chr3:155568494(-) A-I      intronic chr3:155556009(-) A-I      intronic chr3:155556253(-) A-I      intronic chr3:155559685(-) A-I      intronic chr3:155562351(-) A-I      intronic chr3:155566928(-) A-I      intronic chr3:155569260(-) A-I      intronic chr3:155554598(-) A-I      intronic chr3:155566775(-) A-I      intronic chr3:155569984(-) A-I      intronic chr3:155556040(-) A-I      intronic chr3:155562421(-) A-I      intronic chr3:155567971(-) A-I      intronic chr3:155564950(-) A-I      intronic chr3:155569171(-) A-I      intronic chr3:155567973(-) A-I      intronic chr3:155566414(-) A-I      intronic chr3:155559633(-) A-I      intronic chr3:155557732(-) A-I      intronic chr3:155560568(-) A-I      intronic chr3:155562392(-) A-I      intronic chr3:155558455(-) A-I      intronic chr3:155559622(-) A-I      intronic chr3:155563253(-) A-I      intronic chr3:155557698(-) A-I      intronic chr3:155568648(-) A-I      intronic chr3:155560738(-) A-I      intronic chr3:155559092(-) A-I      intronic chr3:155566870(-) A-I      intronic chr3:155564424(-) A-I      intronic chr3:155559031(-) A-I      intronic chr3:155569105(-) A-I      intronic chr3:155568534(-) A-I      intronic chr3:155558090(-) A-I      intronic chr3:155562470(-) A-I      intronic chr3:155559613(-) A-I      intronic chr3:155558766(-) A-I      intronic chr3:155558987(-) A-I      intronic chr3:155568543(-) A-I      intronic chr3:155569329(-) A-I      intronic chr3:155558521(-) A-I      intronic chr3:155562538(-) A-I      ncRNA

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SLC33A1	chr3:155558917(-) A-I intron -    22327324 chr3:155558952(-) A-I intron -    22327324 chr3:155558993(-) A-I intron -    22327324 chr3:155562392(-) A-I intron -    22327324 chr3:155566775(-) A-I intron -    22327324 chr3:155568630(-) A-I intron -    22327324 chr3:155568633(-) A-I intron -    22327324 chr3:155569101(-) A-I intron -    22327324 chr3:155568673(-) A-I intron -    22028664 chr3:155568678(-) A-I intron -    22028664 chr3:155568679(-) A-I intron -    22028664 chr3:155568687(-) A-I intron -    22028664 chr3:155568767(-) A-I intron -    22028664 chr3:155568768(-) A-I intron -    22028664 chr3:155568776(-) A-I intron -    22028664 chr3:155568788(-) A-I intron -    22028664 chr3:155568789(-) A-I intron -    22028664 chr3:155568811(-) A-I intron -    22028664 chr3:155568851(-) A-I intron -    22028664 chr3:155568858(-) A-I intron -    22028664 chr3:155568868(-) A-I intron -    22028664 chr3:155568891(-) A-I intron -    22028664 chr3:155568903(-) A-I intron -    22028664 chr3:155568909(-) A-I intron -    22028664 chr3:155568918(-) A-I intron -    22028664 chr3:155568947(-) A-I intron -    22028664 chr3:155568953(-) A-I intron -    22028664 chr3:155568961(-) A-I intron -    22028664 chr3:155568978(-) A-I intron -    22028664 chr3:155568986(-) A-I intron -    22028664 chr3:155568992(-) A-I intron -    22028664 chr3:155546986(-) A-G intron -    22484847 chr3:155554598(-) A-G intron -    22484847 chr3:155554619(-) A-G intron -    22484847 chr3:155555847(-) A-G intron -    22484847 chr3:155555863(-) A-G intron -    22484847 chr3:155555896(-) A-G intron -    22484847 chr3:155555936(-) A-G intron -    22484847 chr3:155556009(-) A-G intron -    22484847 chr3:155556040(-) A-G intron -    22484847 chr3:155556313(-) A-G intron -    22484847 chr3:155556387(-) A-G intron -    22484847 chr3:155556523(-) A-G intron -    22484847 chr3:155556587(-) A-G intron -    22484847 chr3:155556638(-) A-G intron -    22484847 chr3:155557609(-) A-G intron -    22484847 chr3:155557687(-) A-G intron -    22484847 chr3:155557698(-) A-G intron -    22484847 chr3:155558014(-) A-G intron -    22484847 chr3:155558090(-) A-G intron -    22484847 chr3:155558101(-) A-G intron -    22484847 chr3:155558307(-) A-G intron -    22484847 chr3:155558350(-) A-G intron -    22484847 chr3:155558362(-) A-G intron -    22484847 chr3:155558412(-) A-G intron -    22484847 chr3:155558455(-) A-G intron -    22484847 chr3:155558491(-) A-G intron -    22484847 chr3:155558520(-) A-G intron -    22484847 chr3:155558521(-) A-G intron -    22484847 chr3:155558584(-) A-G intron -    22484847 chr3:155558674(-) A-G intron -    22484847 chr3:155558687(-) A-G intron -    22484847 chr3:155558691(-) A-G intron -    22484847 chr3:155558766(-) A-G intron -    22484847 chr3:155558917(-) A-G intron -    22484847 chr3:155558952(-) A-G intron -    22484847 chr3:155558966(-) A-G intron -    22484847 chr3:155558969(-) A-G intron -    22484847 chr3:155558987(-) A-G intron -    22484847 chr3:155558993(-) A-G intron -    22484847 chr3:155559023(-) A-G intron -    22484847 chr3:155559031(-) A-G intron -    22484847 chr3:155559060(-) A-G intron -    22484847 chr3:155559087(-) A-G intron -    22484847 chr3:155559091(-) A-G intron -    22484847 chr3:155559092(-) A-G intron -    22484847 chr3:155559096(-) A-G intron -    22484847 chr3:155559525(-) A-T intron -    22484847 chr3:155559529(-) A-G intron -    22484847 chr3:155559531(-) T-A intron -    22484847 chr3:155559613(-) A-G intron -    22484847 chr3:155559633(-) A-G intron -    22484847 chr3:155559634(-) A-G intron -    22484847 chr3:155559675(-) A-G intron -    22484847 chr3:155559764(-) A-G intron -    22484847 chr3:155559783(-) A-G intron -    22484847 chr3:155560606(-) A-G intron -    22484847 chr3:155560675(-) A-G intron -    22484847 chr3:155560697(-) A-G intron -    22484847 chr3:155560728(-) A-G intron -    22484847 chr3:155560733(-) A-G intron -    22484847 chr3:155560738(-) A-G intron -    22484847 chr3:155562392(-) A-G intron -    22484847 chr3:155562421(-) A-G intron -    22484847 chr3:155563253(-) A-G intron -    22484847 chr3:155563260(-) A-G intron -    22484847 chr3:155564345(-) A-G intron -    22484847 chr3:155564383(-) A-G intron -    22484847 chr3:155564436(-) A-G intron -    22484847 chr3:155564950(-) A-G intron -    22484847 chr3:155566026(-) T-C intron -    22484847 chr3:155566267(-) A-G intron -    22484847 chr3:155566282(-) A-G intron -    22484847 chr3:155566408(-) A-G intron -    22484847 chr3:155566437(-) A-G intron -    22484847 chr3:155566457(-) A-G intron -    22484847 chr3:155566764(-) A-G intron -    22484847 chr3:155566775(-) A-G intron -    22484847 chr3:155566883(-) A-G intron -    22484847 chr3:155566976(-) A-G intron -    22484847 chr3:155566977(-) A-G intron -    22484847 chr3:155567585(-) A-G intron -    22484847 chr3:155567588(-) A-G intron -    22484847 chr3:155567610(-) A-G intron -    22484847 chr3:155567614(-) A-G intron -    22484847 chr3:155567894(-) A-G intron -    22484847 chr3:155567922(-) A-G intron -    22484847 chr3:155567926(-) A-G intron -    22484847 chr3:155567975(-) A-G intron -    22484847 chr3:155567980(-) T-A intron -    22484847 chr3:155568016(-) A-G intron -    22484847 chr3:155568077(-) A-G intron -    22484847 chr3:155568494(-) A-G intron -    22484847 chr3:155568543(-) A-G intron -    22484847 chr3:155568570(-) A-G intron -    22484847 chr3:155568599(-) A-G intron -    22484847 chr3:155568630(-) A-G intron -    22484847 chr3:155568633(-) A-G intron -    22484847 chr3:155568648(-) A-G intron -    22484847 chr3:155568679(-) A-G intron -    22484847 chr3:155568788(-) A-G intron -    22484847 chr3:155568896(-) A-G intron -    22484847 chr3:155568947(-) A-G intron -    22484847 chr3:155569101(-) A-G intron -    22484847 chr3:155569105(-) A-G intron -    22484847 chr3:155569237(-) A-G intron -    22484847 chr3:155569240(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC33A1	chr3:155539282-155539283(-) m6A 3'UTR       27773535 chr3:155544198-155544199(-) m6A 3'UTR       27773535 chr3:155544266-155544267(-) m6A 3'UTR       27773535 chr3:155544322-155544323(-) m6A 3'UTR       27773535 chr3:155544404-155544405(-) m6A 3'UTR       24981863//27773535//22608085 chr3:155544506-155544507(-) m6A 3'UTR       25456834//24981863//27773535//22608085 chr3:155545851-155545852(-) m6A 3'UTR//intron       27773535 chr3:155545898-155545899(-) m6A 3'UTR//intron       24981863//27773535//22608085 chr3:155545982-155545983(-) m6A 3'UTR       24981863//27773535//22608085 chr3:155546005-155546006(-) m6A CDS       24981863//27773535//22608085 chr3:155562854-155562855(-) m6A exon//intron       27773535//22608085 chr3:155571122-155571123(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:155571205-155571206(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:155571269-155571270(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:155571298-155571299(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:155571330-155571331(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:155571379-155571380(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr3:155571463-155571464(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr3:155571573-155571574(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr3:155571643-155571644(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr3:155571664-155571665(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr3:155571760-155571761(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr3:155571849-155571850(-) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr3:155571856-155571857(-) m6A 5'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr3:155571882-155571883(-) m6A 5'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr3:155571891-155571892(-) m6A 5'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr3:155571968-155571969(-) m6A 5'UTR       24284625//27773535//22575960 chr3:155572027-155572028(-) Y 5'UTR       26075521 chr3:155572135-155572136(-) m6A 5'UTR       24284625//24981863//27773535//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART12	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	SLC33A1	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART12	Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART12
Interactor2: SLC33A1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg