Basic Information:

  VIRBase ID:  

VHID00343071

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART12:  MIMAT0003423          TNFRSF10B:  NR_027140     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART12	TNFRSF10B
miRBase Accession/Entrez ID	MIMAT0003423	8795
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CD262//DR5//KILLER//KILLER/DR5//TRAIL-R2//TRAILR2//TRICK2//TRICK2A//TRICK2B//TRICKB//ZTNFR9

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TNFRSF10B	chr8:22914007(-) A-I      intronic chr8:22914001(-) A-I      intronic chr8:22913998(-) A-I      intronic chr8:22913984(-) A-I      intronic chr8:22913920(-) A-I      intronic chr8:22909233(-) A-I      intronic chr8:22909229(-) A-I      intronic chr8:22909228(-) A-I      intronic chr8:22909227(-) A-I      intronic chr8:22909224(-) A-I      intronic chr8:22909222(-) A-I      intronic chr8:22909221(-) A-I      intronic chr8:22909218(-) A-I      intronic chr8:22908479(-) A-I      intronic chr8:22908475(-) A-I      intronic chr8:22908439(-) A-I      intronic chr8:22908438(-) A-I      intronic chr8:22899019(-) A-I      intronic chr8:22899001(-) A-I      intronic chr8:22898988(-) A-I      intronic chr8:22898983(-) A-I      intronic chr8:22898963(-) A-I      intronic chr8:22898962(-) A-I      intronic chr8:22898936(-) A-I      intronic chr8:22898935(-) A-I      intronic chr8:22898921(-) A-I      intronic chr8:22898843(-) A-I      intronic chr8:22898842(-) A-I      intronic chr8:22898828(-) A-I      intronic chr8:22898820(-) A-I      intronic chr8:22898777(-) A-I      intronic chr8:22898687(-) A-I      intronic chr8:22897542(-) A-I      intronic chr8:22897539(-) A-I      intronic chr8:22897501(-) A-I      intronic chr8:22897461(-) A-I      intronic chr8:22892950(-) A-I      intronic chr8:22892892(-) A-I      intronic chr8:22892792(-) A-I      intronic chr8:22892787(-) A-I      intronic chr8:22892783(-) A-I      intronic chr8:22892747(-) A-I      intronic chr8:22892731(-) A-I      intronic chr8:22892727(-) A-I      intronic chr8:22890978(-) A-I      intronic chr8:22890908(-) A-I      intronic chr8:22889064(-) A-I      intronic chr8:22882626(-) A-I      intronic chr8:22882542(-) A-I      intronic chr8:22882313(-) A-I      intronic chr8:22882249(-) A-I      intronic chr8:22882205(-) A-I      intronic chr8:22892717(-) A-I      intronic chr8:22915110(-) A-I      intronic chr8:22920024(-) A-I      intronic chr8:22889557(-) A-I      intronic chr8:22889623(-) A-I      intronic chr8:22924763(-) A-I      intronic chr8:22924755(-) A-I      intronic chr8:22924670(-) A-I      intronic chr8:22924600(-) A-I      intronic chr8:22924409(-) A-I      intronic chr8:22924241(-) A-I      intronic chr8:22924178(-) A-I      intronic chr8:22923782(-) A-I      intronic chr8:22923734(-) A-I      intronic chr8:22923727(-) A-I      intronic chr8:22923713(-) A-I      intronic chr8:22923593(-) A-I      intronic chr8:22923578(-) A-I      intronic chr8:22920823(-) A-I      intronic chr8:22920815(-) A-I      intronic chr8:22920778(-) A-I      intronic chr8:22920774(-) A-I      intronic chr8:22920695(-) A-I      intronic chr8:22920681(-) A-I      intronic chr8:22920664(-) A-I      intronic chr8:22920656(-) A-I      intronic chr8:22920599(-) A-I      intronic chr8:22919909(-) A-I      intronic chr8:22919836(-) A-I      intronic chr8:22916137(-) A-I      intronic chr8:22916127(-) A-I      intronic chr8:22915708(-) A-I      intronic chr8:22915652(-) A-I      intronic chr8:22915597(-) A-I      intronic chr8:22915497(-) A-I      intronic chr8:22915164(-) A-I      intronic chr8:22915008(-) A-I      intronic chr8:22915001(-) A-I      intronic chr8:22914830(-) A-I      intronic chr8:22914804(-) A-I      intronic chr8:22914674(-) A-I      intronic chr8:22914117(-) A-I      intronic chr8:22914081(-) A-I      intronic chr8:22914016(-) A-I      intronic chr8:22889584(-) A-I      intronic chr8:22889065(-) A-I      intronic chr8:22920713(-) A-I      intronic chr8:22882620(-) A-I      intronic chr8:22898821(-) A-I      intronic chr8:22915678(-) A-I      intronic chr8:22919982(-) A-I      intronic chr8:22916206(-) A-I      intronic chr8:22909351(-) A-I      intronic chr8:22916119(-) A-I      intronic chr8:22924527(-) A-I      intronic chr8:22919855(-) A-I      intronic chr8:22924243(-) A-I      intronic chr8:22924221(-) A-I      intronic chr8:22897656(-) A-I      intronic chr8:22920814(-) A-I      intronic chr8:22909225(-) A-I      intronic chr8:22924186(-) A-I      intronic chr8:22914759(-) A-I      intronic chr8:22919794(-) A-I      intronic chr8:22924175(-) A-I      intronic chr8:22914831(-) A-I      intronic chr8:22882483(-) A-I      intronic chr8:22898849(-) A-I      intronic chr8:22915061(-) A-I      intronic chr8:22898837(-) A-I      intronic chr8:22924620(-) A-I      intronic chr8:22909328(-) A-I      intronic chr8:22914681(-) A-I      intronic chr8:22892793(-) A-I      intronic chr8:22915196(-) A-I      intronic chr8:22914735(-) A-I      intronic chr8:22898937(-) A-I      intronic chr8:22924252(-) A-I      intronic chr8:22909329(-) A-I      intronic chr8:22892037(-) A-I      intronic chr8:22919930(-) A-I      intronic chr8:22924629(-) A-I      intronic chr8:22920006(-) A-I      intronic chr8:22916230(-) A-I      intronic chr8:22882177(-) A-I      intronic chr8:22908330(-) A-I      intronic chr8:22916271(-) A-I      intronic chr8:22924630(-) A-I      intronic chr8:22924310(-) A-I      intronic chr8:22919796(-) A-I      intronic chr8:22913992(-) A-I      intronic chr8:22916186(-) A-I      intronic chr8:22899031(-) A-I      intronic chr8:22892922(-) A-I      intronic chr8:22909256(-) A-I      intronic chr8:22920822(-) A-I      intronic chr8:22914095(-) A-I      intronic chr8:22892072(-) A-I      intronic chr8:22909937(-) A-I      intronic chr8:22924298(-) A-I      intronic chr8:22909186(-) A-I      intronic chr8:22882617(-) A-I      intronic chr8:22882318(-) A-I      intronic chr8:22919927(-) A-I      intronic chr8:22924758(-) A-I      intronic chr8:22914638(-) A-I      intronic chr8:22898834(-) A-I      intronic chr8:22909190(-) A-I      intronic chr8:22916195(-) A-I      intronic chr8:22882420(-) A-I      intronic chr8:22887946(-) A-I      intronic chr8:22892123(-) A-I      intronic chr8:22919962(-) A-I      intronic chr8:22882101(-) A-I      intronic chr8:22914733(-) A-I      intronic chr8:22920761(-) A-I      intronic chr8:22924574(-) A-I      intronic chr8:22892873(-) A-I      intronic chr8:22909251(-) A-I      intronic chr8:22916240(-) A-I      intronic chr8:22914130(-) A-I      intronic chr8:22882094(-) A-I      intronic chr8:22892928(-) A-I      intronic chr8:22915124(-) A-I      intronic chr8:22920644(-) A-I      intronic chr8:22919769(-) A-I      intronic chr8:22914742(-) A-I      intronic chr8:22924684(-) A-I      intronic chr8:22923630(-) A-I      intronic chr8:22915153(-) A-I      intronic chr8:22916171(-) A-I      intronic chr8:22924777(-) A-I      intronic chr8:22920617(-) A-I      intronic chr8:22915738(-) A-I      intronic chr8:22916243(-) A-I      intronic chr8:22898923(-) A-I      intronic chr8:22891997(-) A-I      intronic chr8:22892158(-) A-I      intronic chr8:22892906(-) A-I      intronic chr8:22914064(-) A-I      intronic chr8:22904801(-) A-I      intronic chr8:22882189(-) A-I      intronic chr8:22883570(-) A-I      intronic chr8:22915594(-) A-I      intronic chr8:22914691(-) A-I      intronic chr8:22919831(-) A-I      intronic chr8:22919902(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TNFRSF10B	chr8:22919796(-) A-I intron -    22327324 chr8:22879749(-) C-T exon 3'UTR    22484847 chr8:22882101(-) A-G intron -    22484847 chr8:22882177(-) A-G intron -    22484847 chr8:22882189(-) A-G intron -    22484847 chr8:22882318(-) A-G intron -    22484847 chr8:22882319(-) A-G intron -    22484847 chr8:22882483(-) A-G intron -    22484847 chr8:22882524(-) A-G intron -    22484847 chr8:22882617(-) A-G intron -    22484847 chr8:22882618(-) A-G intron -    22484847 chr8:22882620(-) A-G intron -    22484847 chr8:22883545(-) A-G intron -    22484847 chr8:22887946(-) A-G intron -    22484847 chr8:22892019(-) A-G intron -    22484847 chr8:22892037(-) A-G intron -    22484847 chr8:22892123(-) A-G intron -    22484847 chr8:22892793(-) A-G intron -    22484847 chr8:22892905(-) A-G intron -    22484847 chr8:22892922(-) A-G intron -    22484847 chr8:22892936(-) G-A intron -    22484847 chr8:22898634(-) A-G intron -    22484847 chr8:22898710(-) A-G intron -    22484847 chr8:22898821(-) A-G intron -    22484847 chr8:22898837(-) A-G intron -    22484847 chr8:22898849(-) A-G intron -    22484847 chr8:22899031(-) A-G intron -    22484847 chr8:22902573(-) G-T intron -    22484847 chr8:22904801(-) A-G intron -    22484847 chr8:22905842(-) T-C intron -    22484847 chr8:22905950(-) G-T intron -    22484847 chr8:22908330(-) A-G intron -    22484847 chr8:22908543(-) A-G intron -    22484847 chr8:22909186(-) A-G intron -    22484847 chr8:22909190(-) A-G intron -    22484847 chr8:22909196(-) A-G intron -    22484847 chr8:22909213(-) C-T intron -    22484847 chr8:22909214(-) G-A intron -    22484847 chr8:22909231(-) A-G intron -    22484847 chr8:22909256(-) A-G intron -    22484847 chr8:22909328(-) A-G intron -    22484847 chr8:22909351(-) A-G intron -    22484847 chr8:22909937(-) A-G intron -    22484847 chr8:22913909(-) T-C intron -    22484847 chr8:22913910(-) T-C intron -    22484847 chr8:22913992(-) A-G intron -    22484847 chr8:22914064(-) A-G intron -    22484847 chr8:22914095(-) A-G intron -    22484847 chr8:22914120(-) A-G intron -    22484847 chr8:22914130(-) A-G intron -    22484847 chr8:22914133(-) A-G intron -    22484847 chr8:22914638(-) A-G intron -    22484847 chr8:22914691(-) A-G intron -    22484847 chr8:22914735(-) A-G intron -    22484847 chr8:22914736(-) A-G intron -    22484847 chr8:22914742(-) A-G intron -    22484847 chr8:22914748(-) A-G intron -    22484847 chr8:22914759(-) A-G intron -    22484847 chr8:22914831(-) A-G intron -    22484847 chr8:22915062(-) A-G intron -    22484847 chr8:22915125(-) A-G intron -    22484847 chr8:22915128(-) A-G intron -    22484847 chr8:22915144(-) A-G intron -    22484847 chr8:22915197(-) A-G intron -    22484847 chr8:22915568(-) A-G intron -    22484847 chr8:22915594(-) A-G intron -    22484847 chr8:22915603(-) A-G intron -    22484847 chr8:22915612(-) A-G intron -    22484847 chr8:22915660(-) A-G intron -    22484847 chr8:22915677(-) A-G intron -    22484847 chr8:22915678(-) A-G intron -    22484847 chr8:22915738(-) A-G intron -    22484847 chr8:22916119(-) A-G intron -    22484847 chr8:22916171(-) A-G intron -    22484847 chr8:22916186(-) A-G intron -    22484847 chr8:22916195(-) A-G intron -    22484847 chr8:22916206(-) A-G intron -    22484847 chr8:22916230(-) A-G intron -    22484847 chr8:22916243(-) A-G intron -    22484847 chr8:22919769(-) A-G intron -    22484847 chr8:22919794(-) A-G intron -    22484847 chr8:22919796(-) A-G intron -    22484847 chr8:22919802(-) A-G intron -    22484847 chr8:22919831(-) A-G intron -    22484847 chr8:22919927(-) A-G intron -    22484847 chr8:22919930(-) A-G intron -    22484847 chr8:22919962(-) A-G intron -    22484847 chr8:22919982(-) A-G intron -    22484847 chr8:22920003(-) A-G intron -    22484847 chr8:22920004(-) A-G intron -    22484847 chr8:22920006(-) A-G intron -    22484847 chr8:22920617(-) A-G intron -    22484847 chr8:22920698(-) A-G intron -    22484847 chr8:22920749(-) A-G intron -    22484847 chr8:22920761(-) A-G intron -    22484847 chr8:22920814(-) A-G intron -    22484847 chr8:22920822(-) A-G intron -    22484847 chr8:22920854(-) A-G intron -    22484847 chr8:22920858(-) A-T intron -    22484847 chr8:22924175(-) A-G intron -    22484847 chr8:22924176(-) A-G intron -    22484847 chr8:22924177(-) A-G intron -    22484847 chr8:22924186(-) A-G intron -    22484847 chr8:22924221(-) A-G intron -    22484847 chr8:22924243(-) A-G intron -    22484847 chr8:22924252(-) A-G intron -    22484847 chr8:22924288(-) A-G intron -    22484847 chr8:22924298(-) A-G intron -    22484847 chr8:22924310(-) A-G intron -    22484847 chr8:22924347(-) A-G intron -    22484847 chr8:22924526(-) A-G intron -    22484847 chr8:22924527(-) A-G intron -    22484847 chr8:22924574(-) A-G intron -    22484847 chr8:22924589(-) A-G intron -    22484847 chr8:22924620(-) A-G intron -    22484847 chr8:22924629(-) A-G intron -    22484847 chr8:22924630(-) A-G intron -    22484847 chr8:22924664(-) A-G intron -    22484847 chr8:22924684(-) A-G intron -    22484847 chr8:22924694(-) A-G intron -    22484847 chr8:22924758(-) A-G intron -    22484847 chr8:22924777(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TNFRSF10B	chr8:22878665-22878666(-) m6A 3'UTR//exon       26404942 chr8:22878698-22878699(-) m6A 3'UTR//exon       26404942 chr8:22878998-22878999(-) m6A 3'UTR//exon       26404942 chr8:22879031-22879032(-) m6A 3'UTR//exon       26404942 chr8:22879090-22879091(-) m6A 3'UTR//exon       26404942 chr8:22879100-22879101(-) m6A 3'UTR//exon       26404942 chr8:22879179-22879180(-) m6A 3'UTR//exon       26404942 chr8:22879189-22879190(-) m6A 3'UTR//exon       26404942 chr8:22879246-22879247(-) m6A 3'UTR//exon       26404942 chr8:22879251-22879252(-) m6A 3'UTR//exon       26404942 chr8:22879534-22879535(-) m6A 3'UTR//exon       24284625//24981863 chr8:22879558-22879559(-) m6A 3'UTR//exon       24284625//24981863 chr8:22879653-22879654(-) m6A 3'UTR//exon       24209618 chr8:22879790-22879791(-) m6A 3'UTR//exon       24209618//27773535 chr8:22879970-22879971(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr8:22880031-22880032(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr8:22880063-22880064(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr8:22880116-22880117(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr8:22880158-22880159(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr8:22880199-22880200(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr8:22880247-22880248(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr8:22880270-22880271(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr8:22880329-22880330(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr8:22880367-22880368(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr8:22880412-22880413(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr8:22880466-22880467(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr8:22880489-22880490(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr8:22881770-22881771(-) m6A 3'UTR//CDS//exon       24284625//24209618//27773535//27371828//27773536//22575960//22608085 chr8:22884775-22884776(-) m6A 3'UTR//CDS//exon       24284625//27773535 chr8:22887197-22887198(-) m6A 3'UTR//CDS//exon       26404942//22575960 chr8:22888330-22888331(-) m6A CDS//exon       26404942 chr8:22888335-22888336(-) m6A CDS//exon       26404942 chr8:22900420-22900421(-) m6A exon//intron       26404942//27773535 chr8:22900443-22900444(-) m6A exon//intron       27773535 chr8:22900453-22900454(-) m6A exon//intron       27773535 chr8:22900465-22900466(-) m6A exon//intron       27773535 chr8:22900482-22900483(-) m6A exon//intron       27773535 chr8:22900721-22900722(-) m6A CDS//exon//intron       27773535//27773536 chr8:22907384-22907385(-) m6A exon//intron       27773536 chr8:22907389-22907390(-) m6A exon//intron       27773536 chr8:22926298-22926299(-) m6A CDS//exon       24284625//25456834//27773536 chr8:22926344-22926345(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960 chr8:22926392-22926393(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr8:22926401-22926402(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr8:22926430-22926431(-) m6A 5'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr8:22926447-22926448(-) m6A 5'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr8:22926509-22926510(-) m6A 5'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr8:22926536-22926537(-) m6A 5'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr8:22926664-22926665(-) m6A 5'UTR       24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART12	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	TNFRSF10B	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol HCC cell line (HepG2)|HeLa-S3 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART12	Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART12
Interactor2: TNFRSF10B

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg