Basic Information:

  VIRBase ID:  

VHID00342996

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART12:  MIMAT0003423          RAD54L:  NM_001370766     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART12	RAD54L
miRBase Accession/Entrez ID	MIMAT0003423	8438
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	hHR54//HR54//hRAD54//RAD54A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RAD54L	chr1:46735656(+) A-I      intronic chr1:46733887(+) A-I      intronic chr1:46735624(+) A-I      intronic chr1:46735109(+) A-I      intronic chr1:46734603(+) A-I      intronic chr1:46735625(+) A-I      intronic chr1:46724940(+) A-I      intronic chr1:46727824(+) A-I      intronic chr1:46727830(+) A-I      intronic chr1:46727831(+) A-I      intronic chr1:46727932(+) A-I      intronic chr1:46727959(+) A-I      intronic chr1:46727968(+) A-I      intronic chr1:46727972(+) A-I      intronic chr1:46729529(+) A-I      intronic chr1:46729609(+) A-I      intronic chr1:46729611(+) A-I      intronic chr1:46729742(+) A-I      intronic chr1:46733841(+) A-I      intronic chr1:46733977(+) A-I      intronic chr1:46734604(+) A-I      intronic chr1:46734708(+) A-I      intronic chr1:46735180(+) A-I      intronic chr1:46735189(+) A-I      intronic chr1:46735596(+) A-I      intronic chr1:46735736(+) A-I      intronic chr1:46721271(+) A-I      intronic chr1:46719022(+) A-I      intronic chr1:46719084(+) A-I      intronic chr1:46722614(+) A-I      intronic chr1:46722615(+) A-I      intronic chr1:46722695(+) A-I      intronic chr1:46722705(+) A-I      intronic chr1:46724872(+) A-I      intronic chr1:46724884(+) A-I      intronic chr1:46734512(+) A-I      intronic chr1:46737090(+) A-I      intronic chr1:46734610(+) A-I      intronic chr1:46735803(+) A-I      intronic chr1:46719172(+) A-I      intronic chr1:46731129(+) A-I      intronic chr1:46727694(+) A-I      intronic chr1:46724876(+) A-I      intronic chr1:46735710(+) A-I      intronic chr1:46735646(+) A-I      intronic chr1:46734590(+) A-I      intronic chr1:46733858(+) A-I      intronic chr1:46728020(+) A-I      intronic chr1:46733818(+) A-I      intronic chr1:46733854(+) A-I      intronic chr1:46733880(+) A-I      intronic chr1:46719028(+) A-I      intronic chr1:46735962(+) A-I      intronic chr1:46735943(+) A-I      intronic chr1:46741894(+) A-I      intronic chr1:46735864(+) A-I      intronic chr1:46734577(+) A-I      intronic chr1:46734619(+) A-I      intronic chr1:46733888(+) A-I      intronic chr1:46735697(+) A-I      intronic chr1:46734507(+) A-I      intronic chr1:46734623(+) A-I      intronic chr1:46737164(+) A-I      intronic chr1:46734621(+) A-I      intronic chr1:46719037(+) A-I      intronic chr1:46737262(+) A-I      intronic chr1:46733838(+) A-I      intronic chr1:46733969(+) A-I      intronic chr1:46735125(+) A-I      intronic chr1:46735630(+) A-I      intronic chr1:46741998(+) A-I      intronic chr1:46725190(+) A-I      intronic chr1:46734465(+) A-I      intronic chr1:46735560(+) A-I      intronic chr1:46733802(+) A-I      intronic chr1:46736020(+) A-I      intronic chr1:46728029(+) A-I      intronic chr1:46735884(+) A-I      intronic chr1:46734579(+) A-I      intronic chr1:46735004(+) A-I      intronic chr1:46729599(+) A-I      intronic chr1:46721848(+) A-I      intronic chr1:46716437(+) A-I      intronic chr1:46735080(+) A-I      intronic chr1:46727690(+) A-I      intronic chr1:46730916(+) A-I      intronic chr1:46734673(+) A-I      intronic chr1:46735787(+) A-I      intronic chr1:46725431(+) A-I      intronic chr1:46734637(+) A-I      intronic chr1:46737856(+) A-I      intronic chr1:46735129(+) A-I      intronic chr1:46724934(+) A-I      intronic chr1:46734672(+) A-I      intronic chr1:46725225(+) A-I      intronic chr1:46737880(+) A-I      intronic chr1:46737832(+) A-I      intronic chr1:46716397(+) A-I      intronic chr1:46733883(+) A-I      intronic chr1:46734467(+) A-I      intronic chr1:46734538(+) A-I      intronic chr1:46733839(+) A-I      intronic chr1:46731126(+) A-I      intronic chr1:46722558(+) A-I      intronic chr1:46735097(+) A-I      intronic chr1:46734567(+) A-I      intronic chr1:46735626(+) A-I      intronic chr1:46735930(+) A-I      intronic chr1:46727544(+) A-I      intronic chr1:46742080(+) A-I      intronic chr1:46733891(+) A-I      intronic chr1:46725192(+) A-I      intronic chr1:46733882(+) A-I      intronic chr1:46735020(+) A-I      intronic chr1:46735165(+) A-I      intronic chr1:46718623(+) A-I      intronic chr1:46731057(+) A-I      intronic chr1:46735579(+) A-I      intronic chr1:46735032(+) A-I      intronic chr1:46728033(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RAD54L	chr1:46733802(+) A-I intron -    22327324 chr1:46735962(+) A-I intron -    22327324 chr1:46716437(+) A-G intron -    22484847 chr1:46718700(+) T-C intron -    22484847 chr1:46719028(+) A-G intron -    22484847 chr1:46719037(+) A-G intron -    22484847 chr1:46719172(+) A-G intron -    22484847 chr1:46719843(+) T-C intron -    22484847 chr1:46722558(+) A-G intron -    22484847 chr1:46724876(+) A-G intron -    22484847 chr1:46724945(+) T-C intron -    22484847 chr1:46725190(+) A-G intron -    22484847 chr1:46725192(+) A-G intron -    22484847 chr1:46725225(+) A-G intron -    22484847 chr1:46728020(+) A-G intron -    22484847 chr1:46728029(+) A-G intron -    22484847 chr1:46729599(+) A-G intron -    22484847 chr1:46730916(+) A-G intron -    22484847 chr1:46731126(+) A-G intron -    22484847 chr1:46731129(+) A-G intron -    22484847 chr1:46731197(+) T-C intron -    22484847 chr1:46733802(+) A-G intron -    22484847 chr1:46733838(+) A-G intron -    22484847 chr1:46733839(+) A-G intron -    22484847 chr1:46733854(+) A-G intron -    22484847 chr1:46733883(+) A-G intron -    22484847 chr1:46733888(+) A-G intron -    22484847 chr1:46733891(+) A-G intron -    22484847 chr1:46733922(+) T-C intron -    22484847 chr1:46734465(+) A-G intron -    22484847 chr1:46734507(+) A-G intron -    22484847 chr1:46734512(+) A-G intron -    22484847 chr1:46734538(+) A-G intron -    22484847 chr1:46734567(+) A-G intron -    22484847 chr1:46734576(+) T-C intron -    22484847 chr1:46734584(+) T-C intron -    22484847 chr1:46734586(+) T-C intron -    22484847 chr1:46734590(+) A-G intron -    22484847 chr1:46734619(+) A-G intron -    22484847 chr1:46735032(+) A-G intron -    22484847 chr1:46735080(+) A-G intron -    22484847 chr1:46735097(+) A-G intron -    22484847 chr1:46735104(+) T-C intron -    22484847 chr1:46735129(+) A-G intron -    22484847 chr1:46735579(+) A-G intron -    22484847 chr1:46735626(+) A-G intron -    22484847 chr1:46735630(+) A-G intron -    22484847 chr1:46735646(+) A-G intron -    22484847 chr1:46735787(+) A-G intron -    22484847 chr1:46735930(+) A-G intron -    22484847 chr1:46735941(+) T-C intron -    22484847 chr1:46735962(+) A-G intron -    22484847 chr1:46735965(+) T-C intron -    22484847 chr1:46737090(+) A-G intron -    22484847 chr1:46737164(+) A-G intron -    22484847 chr1:46737832(+) A-G intron -    22484847 chr1:46737856(+) A-G intron -    22484847 chr1:46737880(+) A-G intron -    22484847 chr1:46742501(+) T-C intron -    22484847 chr1:46742762(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RAD54L	chr1:46713631-46713632(+) m6A 5'UTR//intron       - chr1:46713657-46713658(+) m6A 5'UTR//intron       - chr1:46713749-46713750(+) m6A 5'UTR//intron       24284625//24209618//24981863 chr1:46713755-46713756(+) m6A 5'UTR//intron       24284625//24209618//24981863 chr1:46713789-46713790(+) m6A 5'UTR//intron       24284625//24981863 chr1:46726515-46726516(+) m6A CDS//intron       24981863//22575960 chr1:46726594-46726595(+) m6A 5'UTR//CDS//intron       27773535//22575960 chr1:46736332-46736333(+) m6A 3'UTR//CDS//intron       - chr1:46736405-46736406(+) m6A 3'UTR//CDS//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART12	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	RAD54L	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART12	Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART12
Interactor2: RAD54L

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg