Basic Information:

  VIRBase ID:  

VHID00341769

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART12:  MIMAT0003423          TOR1A:  NM_000113     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART12	TOR1A
miRBase Accession/Entrez ID	MIMAT0003423	1861
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AMC5//DQ2//DYT1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TOR1A	chr9:132582971(-) A-I      intronic chr9:132582628(-) A-I      intronic chr9:132582627(-) A-I      intronic chr9:132582605(-) A-I      intronic chr9:132582589(-) A-I      intronic chr9:132582486(-) A-I      intronic chr9:132581980(-) A-I      intronic chr9:132581974(-) A-I      intronic chr9:132582633(-) A-I      intronic chr9:132583153(-) A-I      intronic chr9:132583133(-) A-I      intronic chr9:132582539(-) A-I      intronic chr9:132581915(-) A-I      intronic chr9:132581855(-) A-I      intronic chr9:132582671(-) A-I      intronic chr9:132582549(-) A-I      intronic chr9:132583338(-) A-I      intronic chr9:132583581(-) A-I      intronic chr9:132582970(-) A-I      intronic chr9:132581664(-) A-I      intronic chr9:132583038(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TOR1A	chr9:132582998(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TOR1A	chr9:132575323-132575324(-) m6A 3'UTR       27773535//22608085 chr9:132575517-132575518(-) m6A 3'UTR       24284625//24981863//26404942//27773535//22608085 chr9:132575598-132575599(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535//22608085 chr9:132575644-132575645(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085 chr9:132575803-132575804(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr9:132575872-132575873(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085 chr9:132576037-132576038(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr9:132576066-132576067(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr9:132576203-132576204(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr9:132576365-132576366(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr9:132576424-132576425(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr9:132576467-132576468(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr9:132580617-132580618(-) m6A exon//intron       24284625//24209618//24981863//27773535//22608085 chr9:132580637-132580638(-) m6A exon//intron       24284625//24981863//27773535//22608085 chr9:132580800-132580801(-) m6A CDS//exon       24981863 chr9:132580835-132580836(-) m6A CDS//exon       24981863 chr9:132580842-132580843(-) m6A CDS//exon       24981863 chr9:132580857-132580858(-) m6A CDS//exon       24981863 chr9:132584875-132584876(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085 chr9:132584929-132584930(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085 chr9:132584993-132584994(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr9:132585021-132585022(-) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr9:132585040-132585041(-) m6A CDS//exon       24284625//24209618//24981863//22608085 chr9:132585090-132585091(-) m6A CDS//exon       24284625//24209618//27773535 chr9:132585604-132585605(-) m6A exon//intron       24284625//27773535 chr9:132585617-132585618(-) m6A exon//intron       24284625//27773535 chr9:132586283-132586284(-) m6A CDS//exon       24284625//24981863//27371828//27773536//22575960 chr9:132586389-132586390(-) m6A 5'UTR       24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART12	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	TOR1A	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART12	Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART12
Interactor2: TOR1A

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg