Basic Information:

  VIRBase ID:  

VHID00341218

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-3p:  MIMAT0003422          GEN1:  NM_001130009     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART11-3p	GEN1
miRBase Accession/Entrez ID	MIMAT0003422	348654
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Gen

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GEN1	chr2:17964540(+) A-I      3'UTR chr2:17960319(+) A-I      intronic chr2:17958318(+) A-I      intronic chr2:17958332(+) A-I      intronic chr2:17958381(+) A-I      intronic chr2:17958325(+) A-I      intronic chr2:17940006(+) A-I      intronic chr2:17937946(+) A-I      intronic chr2:17964454(+) A-I      3'UTR chr2:17940001(+) A-I      intronic chr2:17937955(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GEN1	chr2:17935223-17935224(+) m6A 5'UTR//exon       24981863 chr2:17941327-17941328(+) m6A CDS       24981863 chr2:17942664-17942665(+) m6A CDS//exon       24981863 chr2:17961380-17961381(+) m6A CDS//exon       22608085 chr2:17961905-17961906(+) m6A CDS//exon       24981863//22608085 chr2:17961918-17961919(+) m6A CDS//exon       24981863//22608085 chr2:17961960-17961961(+) m6A CDS//exon       24284625//24981863//22608085 chr2:17962104-17962105(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr2:17962125-17962126(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr2:17962368-17962369(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:17962403-17962404(+) m6A CDS       24284625//24981863//22608085 chr2:17962567-17962568(+) m6A CDS       24284625//24981863//22608085 chr2:17962679-17962680(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:17962700-17962701(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:17962718-17962719(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:17962771-17962772(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:17962785-17962786(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:17962831-17962832(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:17962875-17962876(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr2:17962890-17962891(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr2:17963026-17963027(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr2:17963031-17963032(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr2:17963053-17963054(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr2:17963132-17963133(+) m6A CDS       24284625//24981863//22608085 chr2:17963184-17963185(+) m6A CDS       24284625//24981863//22608085 chr2:17963214-17963215(+) m6A 3'UTR       24981863//22608085 chr2:17963262-17963263(+) m6A 3'UTR       22608085 chr2:17963322-17963323(+) m6A 3'UTR       22608085 chr2:17964251-17964252(+) Y 3'UTR       26075521 chr2:17964902-17964903(+) m6A 3'UTR       24981863//27773535//22608085 chr2:17964984-17964985(+) m6A 3'UTR       24981863//27773535//22608085 chr2:17964998-17964999(+) m6A 3'UTR       24981863//27773535//22608085 chr2:17965019-17965020(+) m6A 3'UTR       24209618//24981863//27773535//22608085 chr2:17965030-17965031(+) m6A 3'UTR       24209618//24981863//27773535//22608085 chr2:17965157-17965158(+) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085 chr2:17965171-17965172(+) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085 chr2:17965257-17965258(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:17965262-17965263(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:17965273-17965274(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:17965280-17965281(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr2:17965318-17965319(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr2:17965369-17965370(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr2:17965395-17965396(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr2:17965418-17965419(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr2:17965538-17965539(+) m6A 3'UTR       24981863//27773535//22608085 chr2:17965546-17965547(+) m6A 3'UTR       24981863//27773535//22608085 chr2:17965749-17965750(+) m6A 3'UTR       22608085 chr2:17965767-17965768(+) m6A 3'UTR       24981863//22608085 chr2:17965820-17965821(+) m6A 3'UTR       24981863//22608085 chr2:17965853-17965854(+) m6A 3'UTR       24981863//27773535//22608085 chr2:17965905-17965906(+) m6A 3'UTR       24981863//27773535//22608085 chr2:17965932-17965933(+) m6A 3'UTR       24981863//22608085 chr2:17966207-17966208(+) m6A 3'UTR       24981863 chr2:17966312-17966313(+) m6A 3'UTR       24981863 chr2:17966324-17966325(+) m6A 3'UTR       24981863 chr2:17966392-17966393(+) m6A 3'UTR       24981863 chr2:17966437-17966438(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GEN1	Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleus Colon cancer cells     24393600 Nucleus HeLa-S3 cells|K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART11-3p	Nvp-aew541       11476171

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART11-3p
Interactor2: GEN1

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg