Basic Information:

  VIRBase ID:  

VHID00340673

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-3p:  MIMAT0003422          SRCIN1:  NM_025248     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART11-3p	SRCIN1
miRBase Accession/Entrez ID	MIMAT0003422	80725
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	P140//SNIP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SRCIN1	chr17:36737130(-) A-I      intronic chr17:36695568(-) A-I      intronic chr17:36691255(-) A-I      intronic chr17:36693764(-) A-I      intronic chr17:36693479(-) A-I      intronic chr17:36691625(-) A-I      intronic chr17:36691582(-) A-I      intronic chr17:36695618(-) A-I      intronic chr17:36693501(-) A-I      intronic chr17:36691708(-) A-I      intronic chr17:36691540(-) A-I      intronic chr17:36691128(-) A-I      intronic chr17:36693313(-) A-I      intronic chr17:36695589(-) A-I      intronic chr17:36695552(-) A-I      intronic chr17:36691285(-) A-I      intronic chr17:36695595(-) A-I      intronic chr17:36691636(-) A-I      intronic chr17:36691248(-) A-I      intronic chr17:36697288(-) A-I      intronic chr17:36737576(-) A-I      intronic chr17:36693782(-) A-I      intronic chr17:36691245(-) A-I      intronic chr17:36693491(-) A-I      intronic chr17:36696039(-) A-I      intronic chr17:36691090(-) A-I      intronic chr17:36737227(-) A-I      intronic chr17:36697218(-) A-I      intronic chr17:36691572(-) A-I      intronic chr17:36691317(-) A-I      intronic chr17:36691590(-) A-I      intronic chr17:36691737(-) A-I      intronic chr17:36691298(-) A-I      intronic chr17:36737287(-) A-I      intronic chr17:36691237(-) A-I      intronic chr17:36693502(-) A-I      intronic chr17:36693167(-) A-I      intronic chr17:36691608(-) A-I      intronic chr17:36695575(-) A-I      intronic chr17:36693519(-) A-I      intronic chr17:36693506(-) A-I      intronic chr17:36691088(-) A-I      intronic chr17:36737124(-) A-I      intronic chr17:36691272(-) A-I      intronic chr17:36691310(-) A-I      intronic chr17:36691172(-) A-I      intronic chr17:36739356(-) A-I      intronic chr17:36691555(-) A-I      intronic chr17:36691097(-) A-I      intronic chr17:36691714(-) A-I      intronic chr17:36691581(-) A-I      intronic chr17:36691511(-) A-I      intronic chr17:36691655(-) A-I      intronic chr17:36695571(-) A-I      intronic chr17:36693195(-) A-I      intronic chr17:36691715(-) A-I      intronic chr17:36693770(-) A-I      intronic chr17:36693533(-) A-I      intronic chr17:36691142(-) A-I      intronic chr17:36691168(-) A-I      intronic chr17:36693301(-) A-I      intronic chr17:36691654(-) A-I      intronic chr17:36739889(-) A-I      intronic chr17:36691197(-) A-I      intronic chr17:36695612(-) A-I      intronic chr17:36691321(-) A-I      intronic chr17:36695576(-) A-I      intronic chr17:36691235(-) A-I      intronic chr17:36691106(-) A-I      intronic chr17:36738243(-) A-I      intronic chr17:36700675(-) A-I      intronic chr17:36732263(-) A-I      intronic chr17:36691645(-) A-I      intronic chr17:36695581(-) A-I      intronic chr17:36695596(-) A-I      intronic chr17:36693837(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SRCIN1	chr17:36697984(-) A-I intron -    15342557 chr17:36698008(-) A-I intron -    15342557 chr17:36698025(-) A-I intron -    15342557 chr17:36698031(-) A-I intron -    15342557 chr17:36698040(-) A-I intron -    15342557 chr17:36698063(-) A-I intron -    15342557 chr17:36698085(-) A-I intron -    15342557 chr17:36698102(-) A-I intron -    15342557 chr17:36698128(-) A-I intron -    15342557 chr17:36698133(-) A-I intron -    15342557 chr17:36691285(-) A-I intron -    21960545

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SRCIN1	chr17:36688709-36688710(-) m6A 3'UTR       - chr17:36688726-36688727(-) m6A 3'UTR       - chr17:36688889-36688890(-) m6A 3'UTR       25456834//24981863//27773536 chr17:36688958-36688959(-) m6A 3'UTR       25456834//24981863 chr17:36689002-36689003(-) m6A 3'UTR       25456834//24981863 chr17:36689042-36689043(-) m6A 3'UTR       24284625//25456834 chr17:36689049-36689050(-) m6A 3'UTR       24284625//25456834 chr17:36689092-36689093(-) m6A 3'UTR       24284625//25456834//24981863 chr17:36689109-36689110(-) m6A 3'UTR       25456834//24981863 chr17:36689118-36689119(-) m6A 3'UTR       25456834//24981863 chr17:36689129-36689130(-) m6A 3'UTR       25456834//24981863 chr17:36698931-36698932(-) m6A 3'UTR//exon//intron       - chr17:36698955-36698956(-) m6A 3'UTR//exon//intron       - chr17:36698971-36698972(-) m6A 3'UTR//exon//intron       - chr17:36701218-36701219(-) m6A CDS//intron       - chr17:36701297-36701298(-) m6A CDS//intron       - chr17:36701310-36701311(-) m6A CDS//intron       - chr17:36701317-36701318(-) m6A CDS//intron       - chr17:36701357-36701358(-) m6A CDS//intron       - chr17:36701366-36701367(-) m6A CDS//intron       - chr17:36701382-36701383(-) m6A CDS//intron       - chr17:36701442-36701443(-) m6A CDS//intron       - chr17:36701498-36701499(-) m6A CDS//intron       24284625//24981863//22608085 chr17:36701561-36701562(-) m6A CDS//exon//intron       24284625//24981863//27773536//22608085 chr17:36701568-36701569(-) m6A CDS//exon//intron       24284625//27773536 chr17:36701585-36701586(-) m6A CDS//exon//intron       24284625//27773536 chr17:36701592-36701593(-) m6A CDS//exon//intron       24284625//27773536 chr17:36701598-36701599(-) m6A CDS//exon//intron       24284625//27773536 chr17:36701607-36701608(-) m6A CDS//exon//intron       24284625//27773536 chr17:36707506-36707507(-) m6A CDS//exon       24209618//27371828//27773536 chr17:36707543-36707544(-) m6A CDS//exon       24209618//27773536 chr17:36707566-36707567(-) m6A CDS//exon       24209618//27773536 chr17:36707611-36707612(-) m6A CDS//exon       24209618//27773536 chr17:36708272-36708273(-) m6A CDS//exon       27773535 chr17:36708294-36708295(-) m6A CDS//exon       27773535 chr17:36714546-36714547(-) m6A CDS//exon       27773536 chr17:36714630-36714631(-) m6A CDS//exon       27773536 chr17:36715625-36715626(-) m6A exon//intron       27773535 chr17:36715671-36715672(-) m6A exon//intron       27773535 chr17:36717702-36717703(-) m6A CDS//exon       22608085 chr17:36717710-36717711(-) m6A CDS//exon       22608085 chr17:36717819-36717820(-) m6A CDS//exon       22608085 chr17:36717863-36717864(-) m6A CDS//exon       22608085 chr17:36718262-36718263(-) m6A CDS//exon       27773536 chr17:36720415-36720416(-) m6A CDS//exon       27773536 chr17:36720458-36720459(-) m6A CDS//exon       27773536 chr17:36720502-36720503(-) m6A CDS//exon       27773536 chr17:36760754-36760755(-) m6A CDS//intron       25456834 chr17:36760762-36760763(-) m6A CDS//intron       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SRCIN1	Exosome Blood     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART11-3p	Nvp-aew541       11476171

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART11-3p
Interactor2: SRCIN1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg