Basic Information:

  VIRBase ID:  

VHID00340664

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-3p:  MIMAT0003422          TRABD:  NM_001320485     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART11-3p	TRABD
miRBase Accession/Entrez ID	MIMAT0003422	80305
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LP6054//PP2447

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TRABD	chr22:50626764(+) A-I      intronic chr22:50626757(+) A-I      intronic chr22:50626738(+) A-I      intronic chr22:50626737(+) A-I      intronic chr22:50634167(+) A-I      intronic chr22:50630369(+) A-I      intronic chr22:50626789(+) A-I      intronic chr22:50626252(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TRABD	chr22:50629067-50629068(+) m6A 5'UTR//intron       - chr22:50632015-50632016(+) m6A CDS//exon       24284625//22575960 chr22:50632068-50632069(+) m6A CDS//exon       24284625//22575960 chr22:50632077-50632078(+) m6A CDS//exon       24284625//22575960 chr22:50632893-50632894(+) m6A CDS//exon       24284625//22575960 chr22:50635350-50635351(+) m6A exon//intron       24284625 chr22:50636007-50636008(+) m6A CDS//exon       27371828//27773536 chr22:50636034-50636035(+) m6A exon//intron       27371828//27773536 chr22:50636283-50636284(+) m6A CDS//exon       - chr22:50636328-50636329(+) m6A CDS//exon       24284625 chr22:50636448-50636449(+) m6A exon//intron       - chr22:50636578-50636579(+) m6A CDS//exon       - chr22:50636951-50636952(+) m6A 3'UTR//exon//intron       24284625//22575960 chr22:50637201-50637202(+) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22575960//22608085 chr22:50637206-50637207(+) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22575960//22608085 chr22:50637287-50637288(+) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22575960//22608085 chr22:50637384-50637385(+) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22575960//22608085 chr22:50637552-50637553(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27371828//27773536//22608085 chr22:50637572-50637573(+) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22608085 chr22:50637645-50637646(+) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr22:50637744-50637745(+) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr22:50637775-50637776(+) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr22:50637860-50637861(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773536//22575960//22608085 chr22:50637886-50637887(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773536//22575960//22608085 chr22:50637998-50637999(+) m6A 3'UTR//exon       22608085 chr22:50638023-50638024(+) m6A 3'UTR//exon       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TRABD	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART11-3p	Nvp-aew541       11476171

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART11-3p
Interactor2: TRABD

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg