Detail Information

Basic Information:


  VIRBase ID:  

VHID00340533

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-3p:           PRDM15:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART11-3p PRDM15
miRBase
Accession/Entrez ID		 MIMAT0003422 63977
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - C21orf83//PFM15//ZNF298

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PRDM15
chr21:43292933(-) A-I      intronic
chr21:43288104(-) A-I      intronic
chr21:43288026(-) A-I      intronic
chr21:43232309(-) A-I      intronic
chr21:43232155(-) A-I      intronic
chr21:43231967(-) A-I      intronic
chr21:43231953(-) A-I      intronic
chr21:43231893(-) A-I      intronic
chr21:43231923(-) A-I      intronic
chr21:43294033(-) A-I      intronic
chr21:43294155(-) A-I      intronic
chr21:43293967(-) A-I      intronic
chr21:43232151(-) A-I      intronic
chr21:43231905(-) A-I      intronic
chr21:43270011(-) A-I      intronic
chr21:43231814(-) A-I      intronic
chr21:43288927(-) A-I      intronic
chr21:43288804(-) A-I      intronic
chr21:43231744(-) A-I      intronic
chr21:43293962(-) A-I      intronic
chr21:43285968(-) A-I      intronic
chr21:43260455(-) A-I      intronic
chr21:43283166(-) A-I      intronic
chr21:43269451(-) A-I      intronic
chr21:43232161(-) A-I      intronic
chr21:43283130(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PRDM15
chr21:43231905(-) A-G intron -    22484847
chr21:43231922(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PRDM15
chr21:43218466-43218467(-) m6A 3'UTR//exon       24284625//28052920//27773535
chr21:43218579-43218580(-) m6A 3'UTR//exon       24284625
chr21:43218610-43218611(-) m6A 3'UTR//exon       24284625//25456834
chr21:43218786-43218787(-) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085
chr21:43218810-43218811(-) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085
chr21:43218838-43218839(-) m6A 3'UTR//exon       24284625//25456834//24981863//22608085
chr21:43218876-43218877(-) m6A 3'UTR//exon       25456834//24981863//22608085
chr21:43219342-43219343(-) m6A 3'UTR//intron       27773535
chr21:43219372-43219373(-) m6A 3'UTR//intron       27773535
chr21:43219459-43219460(-) m6A 3'UTR//intron       27773535
chr21:43220824-43220825(-) m6A 3'UTR//exon       24284625
chr21:43220864-43220865(-) m6A 3'UTR//exon//intron       24284625
chr21:43220937-43220938(-) m6A 3'UTR//exon//intron       24284625//27773535
chr21:43220970-43220971(-) m6A 3'UTR//exon//intron       27773535
chr21:43220976-43220977(-) m6A 3'UTR//exon//intron       27773535
chr21:43221026-43221027(-) m6A 3'UTR//exon//intron       24284625//27773535
chr21:43221111-43221112(-) m6A 3'UTR//exon//intron       24284625//27773535
chr21:43221188-43221189(-) m6A 3'UTR//exon       24284625//24981863//28052920//27773535
chr21:43221212-43221213(-) m6A 3'UTR//exon       24284625//24981863//28052920//27773535
chr21:43221320-43221321(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr21:43221370-43221371(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr21:43221383-43221384(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr21:43221500-43221501(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085
chr21:43221613-43221614(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//22575960
chr21:43221715-43221716(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535
chr21:43222900-43222901(-) m6A 3'UTR//CDS//exon       24284625//27773535//27371828
chr21:43223096-43223097(-) m6A exon//intron       27371828
chr21:43224731-43224732(-) m6A 3'UTR//CDS//exon       24284625
chr21:43224745-43224746(-) m6A 3'UTR//CDS//exon       24284625
chr21:43234131-43234132(-) m6A exon//intron       27773535
chr21:43234181-43234182(-) m6A exon//intron       27773535
chr21:43234228-43234229(-) m6A exon//intron       27773535
chr21:43234275-43234276(-) m6A exon//intron       27773535
chr21:43234325-43234326(-) m6A exon//intron       27773535
chr21:43234372-43234373(-) m6A exon//intron       27773535
chr21:43234981-43234982(-) m6A exon//intron       27773535
chr21:43235028-43235029(-) m6A exon//intron       27773535
chr21:43235075-43235076(-) m6A exon//intron       27773535
chr21:43235122-43235123(-) m6A exon//intron       27773535
chr21:43235169-43235170(-) m6A exon//intron       27773535
chr21:43235217-43235218(-) m6A exon//intron       27773535
chr21:43235264-43235265(-) m6A exon//intron       27773535
chr21:43235314-43235315(-) m6A exon//intron       27773535
chr21:43236183-43236184(-) m6A 3'UTR//CDS//exon       22575960
chr21:43240005-43240006(-) m6A 3'UTR//CDS//exon       22575960
chr21:43241437-43241438(-) m6A 3'UTR//CDS       24284625
chr21:43241446-43241447(-) m6A 3'UTR//CDS       24284625
chr21:43242295-43242296(-) m6A 3'UTR//CDS//exon       24284625
chr21:43246286-43246287(-) Gm intron       -
chr21:43256669-43256670(-) Cm CDS//exon       -
chr21:43259738-43259739(-) m6A CDS       27371828
chr21:43259745-43259746(-) m6A CDS       27371828
chr21:43259789-43259790(-) m6A CDS       27371828
chr21:43259819-43259820(-) m6A CDS       24284625//27371828
chr21:43259861-43259862(-) m6A CDS       24284625
chr21:43259877-43259878(-) m6A CDS       24284625
chr21:43274772-43274773(-) m6A CDS       24284625
chr21:43274823-43274824(-) m6A CDS       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PRDM15
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART11-3p
Nvp-aew541       11476171

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART11-3p
Interactor2: PRDM15

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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