Detail Information

Basic Information:


  VIRBase ID:  

VHID00340349

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-3p:           USP40:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART11-3p USP40
miRBase
Accession/Entrez ID		 MIMAT0003422 55230
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR USP40
chr2:234425212(-) A-I      intronic
chr2:234445650(-) A-I      intronic
chr2:234392054(-) A-I      intronic
chr2:234419220(-) A-I      intronic
chr2:234419216(-) A-I      intronic
chr2:234419213(-) A-I      intronic
chr2:234425376(-) A-I      intronic
chr2:234445623(-) A-I      intronic
chr2:234419203(-) A-I      intronic
chr2:234445628(-) A-I      intronic
chr2:234425303(-) A-I      intronic
chr2:234445622(-) A-I      intronic
chr2:234392037(-) A-I      intronic
chr2:234391892(-) A-I      intronic
chr2:234438741(-) A-I      intronic
chr2:234445593(-) A-I      intronic
chr2:234464718(-) A-I      intronic
chr2:234392025(-) A-I      intronic
chr2:234391919(-) A-I      intronic
chr2:234438640(-) A-I      intronic
chr2:234392042(-) A-I      intronic
chr2:234392050(-) A-I      intronic
chr2:234392099(-) A-I      intronic
chr2:234419223(-) A-I      intronic
chr2:234419243(-) A-I      intronic
chr2:234425085(-) A-I      intronic
chr2:234426159(-) A-I      intronic
chr2:234426275(-) A-I      intronic
chr2:234438621(-) A-I      intronic
chr2:234445288(-) A-I      intronic
chr2:234438552(-) A-I      intronic
chr2:234445175(-) A-I      intronic
chr2:234427156(-) A-I      intronic
chr2:234392096(-) A-I      intronic
chr2:234426238(-) A-I      intronic
chr2:234427169(-) A-I      intronic
chr2:234425457(-) A-I      intronic
chr2:234390933(-) A-I      intronic
chr2:234425467(-) A-I      intronic
chr2:234426195(-) A-I      intronic
chr2:234427137(-) A-I      intronic
chr2:234426268(-) A-I      intronic
chr2:234426146(-) A-I      intronic
chr2:234441471(-) A-I      intronic
chr2:234445251(-) A-I      intronic
chr2:234445211(-) A-I      intronic
chr2:234438659(-) A-I      intronic
chr2:234391294(-) A-I      intronic
chr2:234438583(-) A-I      intronic
chr2:234425421(-) A-I      intronic
chr2:234441416(-) A-I      intronic
chr2:234445668(-) A-I      intronic
chr2:234445291(-) A-I      intronic
chr2:234438594(-) A-I      intronic
chr2:234445629(-) A-I      intronic
chr2:234445729(-) A-I      intronic
chr2:234391353(-) A-I      intronic
chr2:234441465(-) A-I      intronic
chr2:234441396(-) A-I      intronic
chr2:234393402(-) A-I      intronic
chr2:234438610(-) A-I      intronic
chr2:234438619(-) A-I      intronic
chr2:234445733(-) A-I      intronic
chr2:234445221(-) A-I      intronic
chr2:234391334(-) A-I      intronic
chr2:234438543(-) A-I      intronic
chr2:234438663(-) A-I      intronic
chr2:234438650(-) A-I      intronic
chr2:234426169(-) A-I      intronic
chr2:234441447(-) A-I      intronic
chr2:234391958(-) A-I      intronic
chr2:234391446(-) A-I      intronic
chr2:234391339(-) A-I      intronic
chr2:234445259(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED USP40
chr2:234423682(-) A-I intron -    21960545
chr2:234423999(-) A-I intron -    21960545
chr2:234424021(-) A-I intron -    21960545
chr2:234427322(-) A-I intron -    21960545
chr2:234441396(-) A-I intron -    21960545
chr2:234441422(-) A-I intron -    21960545
chr2:234441471(-) A-I intron -    21960545
chr2:234425894(-) A-G intron -    22484847
chr2:234427322(-) A-G intron -    22484847
chr2:234390974(-) A-G intron -    22484847
chr2:234391958(-) A-G intron -    22484847
chr2:234392096(-) A-G intron -    22484847
chr2:234404198(-) A-G intron -    22484847
chr2:234425421(-) A-G intron -    22484847
chr2:234425467(-) A-G intron -    22484847
chr2:234426238(-) A-G intron -    22484847
chr2:234426268(-) A-G intron -    22484847
chr2:234438583(-) A-G intron -    22484847
chr2:234438591(-) A-G intron -    22484847
chr2:234438594(-) A-G intron -    22484847
chr2:234438614(-) A-G intron -    22484847
chr2:234438650(-) A-G intron -    22484847
chr2:234438659(-) A-G intron -    22484847
chr2:234438663(-) A-G intron -    22484847
chr2:234441396(-) A-G intron -    22484847
chr2:234441416(-) A-G intron -    22484847
chr2:234441422(-) A-G intron -    22484847
chr2:234441447(-) A-G intron -    22484847
chr2:234441462(-) A-G intron -    22484847
chr2:234441465(-) A-G intron -    22484847
chr2:234441471(-) A-G intron -    22484847
chr2:234445175(-) A-G intron -    22484847
chr2:234445221(-) A-G intron -    22484847
chr2:234445251(-) A-G intron -    22484847
chr2:234445259(-) A-G intron -    22484847
chr2:234445291(-) A-G intron -    22484847
chr2:234445709(-) A-G intron -    22484847
chr2:234445729(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase USP40
chr2:234384582-234384583(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22608085
chr2:234384599-234384600(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22608085
chr2:234384619-234384620(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27773535//22608085
chr2:234384655-234384656(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr2:234384741-234384742(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr2:234384752-234384753(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr2:234384855-234384856(-) m6A 3'UTR//exon       24284625//27773535
chr2:234384989-234384990(-) m6A 3'UTR//exon       24284625//24981863//22608085
chr2:234385012-234385013(-) m6A 3'UTR//exon       24284625//24981863//22608085
chr2:234385126-234385127(-) m6A 3'UTR//exon       24981863
chr2:234385150-234385151(-) m6A 3'UTR//exon       24981863
chr2:234385466-234385467(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr2:234385530-234385531(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr2:234385718-234385719(-) m6A 3'UTR//exon       24284625//24981863
chr2:234385961-234385962(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:234386005-234386006(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr2:234386072-234386073(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr2:234389874-234389875(-) m6A CDS//exon       24284625//24981863//27773535
chr2:234394236-234394237(-) m6A 3'UTR//CDS//exon       27773535
chr2:234394525-234394526(-) m6A 3'UTR//CDS//exon       27773535
chr2:234396940-234396941(-) m6A 3'UTR//CDS//exon//intron       27773535
chr2:234398029-234398030(-) m6A CDS//exon       27773535
chr2:234474189-234474190(-) m6A CDS//exon       24981863
chr2:234475416-234475417(-) m6A 5'UTR//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate USP40
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART11-3p
Nvp-aew541       11476171

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART11-3p
Interactor2: USP40

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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