Detail Information

Basic Information:


  VIRBase ID:  

VHID00340333

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-3p:           CLN6:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART11-3p CLN6
miRBase
Accession/Entrez ID		 MIMAT0003422 54982
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - CLN4A//HsT18960//nclf

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CLN6
chr15:68519543(-) A-I      intronic
chr15:68519549(-) A-I      intronic
chr15:68519551(-) A-I      intronic
chr15:68510077(-) A-I      intronic
chr15:68519555(-) A-I      intronic
chr15:68519580(-) A-I      intronic
chr15:68519590(-) A-I      intronic
chr15:68518094(-) A-I      intronic
chr15:68510764(-) A-I      intronic
chr15:68510791(-) A-I      intronic
chr15:68510787(-) A-I      intronic
chr15:68510708(-) A-I      intronic
chr15:68510753(-) A-I      intronic
chr15:68510760(-) A-I      intronic
chr15:68510735(-) A-I      intronic
chr15:68510765(-) A-I      intronic
chr15:68518493(-) A-I      intronic
chr15:68518063(-) A-I      intronic
chr15:68518277(-) A-I      intronic
chr15:68518575(-) A-I      intronic
chr15:68517971(-) A-I      intronic
chr15:68518145(-) A-I      intronic
chr15:68517945(-) A-I      intronic
chr15:68518907(-) A-I      intronic
chr15:68518859(-) A-I      intronic
chr15:68519032(-) A-I      intronic
chr15:68518490(-) A-I      intronic
chr15:68516547(-) A-I      intronic
chr15:68517851(-) A-I      intronic
chr15:68518987(-) A-I      intronic
chr15:68518173(-) A-I      intronic
chr15:68518066(-) A-I      intronic
chr15:68517904(-) A-I      intronic
chr15:68516327(-) A-I      intronic
chr15:68518984(-) A-I      intronic
chr15:68518225(-) A-I      intronic
chr15:68518106(-) A-I      intronic
chr15:68519098(-) A-I      intronic
chr15:68519536(-) A-I      intronic
chr15:68517896(-) A-I      intronic
chr15:68519578(-) A-I      intronic
chr15:68518980(-) A-I      intronic
chr15:68518852(-) A-I      intronic
chr15:68510030(-) A-I      intronic
chr15:68519604(-) A-I      intronic
chr15:68518261(-) A-I      intronic
chr15:68504987(-) A-I      intronic
chr15:68518943(-) A-I      intronic
chr15:68509817(-) A-I      intronic
chr15:68519465(-) A-I      intronic
chr15:68518401(-) A-I      intronic
chr15:68510729(-) A-I      intronic
chr15:68518574(-) A-I      intronic
chr15:68518245(-) A-I      intronic
chr15:68518246(-) A-I      intronic
chr15:68510027(-) A-I      intronic
chr15:68510026(-) A-I      intronic
chr15:68510034(-) A-I      intronic
chr15:68505048(-) A-I      intronic
chr15:68506437(-) A-I      intronic
chr15:68510796(-) A-I      intronic
chr15:68519514(-) A-I      intronic
chr15:68519641(-) A-I      intronic
chr15:68510043(-) A-I      intronic
chr15:68518557(-) A-I      intronic
chr15:68518535(-) A-I      intronic
chr15:68519441(-) A-I      intronic
chr15:68519556(-) A-I      intronic
chr15:68518251(-) A-I      intronic
chr15:68519473(-) A-I      intronic
chr15:68518211(-) A-I      intronic
chr15:68510723(-) A-I      intronic
chr15:68518423(-) A-I      intronic
chr15:68510720(-) A-I      intronic
chr15:68519443(-) A-I      intronic
chr15:68519513(-) A-I      intronic
chr15:68508450(-) A-I      intronic
chr15:68518319(-) A-I      intronic
chr15:68517886(-) A-I      intronic
chr15:68518307(-) A-I      intronic
chr15:68518189(-) A-I      intronic
chr15:68510538(-) A-I      intronic
chr15:68510766(-) A-I      intronic
chr15:68510069(-) A-I      intronic
chr15:68518873(-) A-I      intronic
chr15:68519609(-) A-I      intronic
chr15:68518872(-) A-I      intronic
chr15:68510035(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CLN6
chr15:68510030(-) A-I intron -    22327324
chr15:68510034(-) A-I intron -    22327324
chr15:68510043(-) A-I intron -    22327324
chr15:68510723(-) A-I intron -    22327324
chr15:68510729(-) A-I intron -    22327324
chr15:68510766(-) A-I intron -    22327324
chr15:68510026(-) A-G intron -    22484847
chr15:68510027(-) A-G intron -    22484847
chr15:68510030(-) A-G intron -    22484847
chr15:68510034(-) A-G intron -    22484847
chr15:68510035(-) A-G intron -    22484847
chr15:68510043(-) A-G intron -    22484847
chr15:68510729(-) A-G intron -    22484847
chr15:68510766(-) A-G intron -    22484847
chr15:68505021(-) T-A intron -    22484847
chr15:68505988(-) G-A intron -    22484847
chr15:68516547(-) A-G intron -    22484847
chr15:68510720(-) A-G intron -    22484847
chr15:68510723(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CLN6
chr15:68499424-68499425(-) m6A 3'UTR       27773535//22575960
chr15:68499438-68499439(-) m6A 3'UTR       27773535//22575960
chr15:68499470-68499471(-) m6A 3'UTR       27773535//22575960
chr15:68499487-68499488(-) m6A 3'UTR       27773535//22575960
chr15:68499635-68499636(-) Y 3'UTR       26075521
chr15:68499657-68499658(-) Y 3'UTR       26075521
chr15:68499671-68499672(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22575960
chr15:68499781-68499782(-) m6A 3'UTR       24284625//27773536//22575960
chr15:68499816-68499817(-) m6A 3'UTR       24284625//27773536//22575960
chr15:68500377-68500378(-) m6A 3'UTR       24981863
chr15:68500646-68500647(-) m6A 3'UTR//CDS       24284625//27773535//22575960
chr15:68501965-68501966(-) m6A exon//intron       27773535
chr15:68504046-68504047(-) m6A CDS//exon//intron       27773535
chr15:68506202-68506203(-) m6A exon//intron       -
chr15:68506259-68506260(-) m6A exon//intron       27773535
chr15:68506312-68506313(-) m6A exon//intron       24981863//27773535
chr15:68506320-68506321(-) m6A exon//intron       24981863//27773535
chr15:68506339-68506340(-) m6A exon//intron       24981863//27773535
chr15:68506347-68506348(-) m6A exon//intron       24981863//27773535
chr15:68521970-68521971(-) m6A 5'UTR//exon//intron       27773536
chr15:68522022-68522023(-) m6A 5'UTR//intron       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CLN6
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART11-3p
Nvp-aew541       11476171

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART11-3p
Interactor2: CLN6

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...