Basic Information:

  VIRBase ID:  

VHID00340144

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-3p:  MIMAT0003422          CCDC9:  NM_015603     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART11-3p	CCDC9
miRBase Accession/Entrez ID	MIMAT0003422	26093
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CCDC9	chr19:47772157(+) A-I      intronic chr19:47766109(+) A-I      intronic chr19:47766097(+) A-I      intronic chr19:47772125(+) A-I      intronic chr19:47765573(+) A-I      intronic chr19:47765683(+) A-I      intronic chr19:47765553(+) A-I      intronic chr19:47765497(+) A-I      intronic chr19:47764816(+) A-I      intronic chr19:47764815(+) A-I      intronic chr19:47770483(+) A-I      intronic chr19:47770482(+) A-I      intronic chr19:47770412(+) A-I      intronic chr19:47772288(+) A-I      intronic chr19:47770321(+) A-I      intronic chr19:47770302(+) A-I      intronic chr19:47770403(+) A-I      intronic chr19:47773513(+) A-I      intronic chr19:47773486(+) A-I      intronic chr19:47773460(+) A-I      intronic chr19:47773423(+) A-I      intronic chr19:47773387(+) A-I      intronic chr19:47773378(+) A-I      intronic chr19:47771936(+) A-I      intronic chr19:47773305(+) A-I      intronic chr19:47773293(+) A-I      intronic chr19:47772132(+) A-I      intronic chr19:47772096(+) A-I      intronic chr19:47772081(+) A-I      intronic chr19:47772015(+) A-I      intronic chr19:47772011(+) A-I      intronic chr19:47772008(+) A-I      intronic chr19:47771989(+) A-I      intronic chr19:47771973(+) A-I      intronic chr19:47771946(+) A-I      intronic chr19:47773325(+) A-I      intronic chr19:47765522(+) A-I      intronic chr19:47771903(+) A-I      intronic chr19:47773319(+) A-I      intronic chr19:47772087(+) A-I      intronic chr19:47766289(+) A-I      intronic chr19:47772747(+) A-I      intronic chr19:47772060(+) A-I      intronic chr19:47772721(+) A-I      intronic chr19:47773279(+) A-I      intronic chr19:47773365(+) A-I      intronic chr19:47766884(+) A-I      intronic chr19:47766283(+) A-I      intronic chr19:47766243(+) A-I      intronic chr19:47767319(+) A-I      intronic chr19:47765736(+) A-I      intronic chr19:47766161(+) A-I      intronic chr19:47767343(+) A-I      intronic chr19:47772116(+) A-I      intronic chr19:47766345(+) A-I      intronic chr19:47772216(+) A-I      intronic chr19:47772318(+) A-I      intronic chr19:47766110(+) A-I      intronic chr19:47765737(+) A-I      intronic chr19:47765613(+) A-I      intronic chr19:47772269(+) A-I      intronic chr19:47766159(+) A-I      intronic chr19:47772270(+) A-I      intronic chr19:47767400(+) A-I      intronic chr19:47766196(+) A-I      intronic chr19:47771920(+) A-I      intronic chr19:47765119(+) A-I      intronic chr19:47772027(+) A-I      intronic chr19:47773500(+) A-I      intronic chr19:47767275(+) A-I      intronic chr19:47767507(+) A-I      intronic chr19:47764848(+) A-I      intronic chr19:47765548(+) A-I      intronic chr19:47772293(+) A-I      intronic chr19:47766157(+) A-I      intronic chr19:47773360(+) A-I      intronic chr19:47765125(+) A-I      intronic chr19:47773326(+) A-I      intronic chr19:47770406(+) A-I      intronic chr19:47773367(+) A-I      intronic chr19:47765116(+) A-I      intronic chr19:47772681(+) A-I      intronic chr19:47767547(+) A-I      intronic chr19:47767494(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CCDC9	chr19:47766345(+) A-G intron -    22484847 chr19:47772116(+) A-G intron -    22484847 chr19:47772261(+) A-G intron -    22484847 chr19:47772289(+) A-G intron -    22484847 chr19:47773279(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCDC9	chr19:47759736-47759737(+) m6A 5'UTR//intron       24981863 chr19:47759862-47759863(+) m6A 5'UTR       24981863 chr19:47761588-47761589(+) m6A 5'UTR       - chr19:47761632-47761633(+) m6A 5'UTR       24284625//24209618//24981863 chr19:47761864-47761865(+) m6A CDS       24209618//24981863 chr19:47763590-47763591(+) m6A CDS       24209618//24981863 chr19:47763606-47763607(+) m6A CDS       24209618//24981863 chr19:47763851-47763852(+) m6A CDS       24209618 chr19:47763880-47763881(+) m6A CDS       24209618 chr19:47763916-47763917(+) m6A CDS       24284625//24209618 chr19:47764067-47764068(+) m6A CDS       24209618//24981863 chr19:47767884-47767885(+) m6A CDS       24209618//24981863 chr19:47768043-47768044(+) m6A CDS       24209618 chr19:47768060-47768061(+) m6A CDS       24209618 chr19:47768114-47768115(+) m6A CDS       24209618 chr19:47769833-47769834(+) m6A exon//intron       24209618 chr19:47769898-47769899(+) m6A CDS//exon       24209618 chr19:47770038-47770039(+) m6A CDS//exon       24209618 chr19:47773693-47773694(+) m6A CDS//exon       24209618 chr19:47774360-47774361(+) m6A CDS       24284625//24209618//24981863 chr19:47774393-47774394(+) m6A CDS       24284625//24209618//24981863 chr19:47774417-47774418(+) m6A CDS       24284625//24209618//24981863//27371828 chr19:47774432-47774433(+) m6A CDS       24284625//24209618//24981863//27371828 chr19:47774615-47774616(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828 chr19:47774657-47774658(+) m1A CDS       26863196 chr19:47774673-47774674(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828 chr19:47774684-47774685(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828 chr19:47774875-47774876(+) m6A CDS       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CCDC9	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART11-3p	Nvp-aew541       11476171

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART11-3p
Interactor2: CCDC9

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg