Basic Information:

  VIRBase ID:  

VHID00339822

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-3p:  MIMAT0003422          SPOCK2:  NM_014767     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART11-3p	SPOCK2
miRBase Accession/Entrez ID	MIMAT0003422	9806
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	testican-2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SPOCK2	chr10:73836449(-) A-I      intronic chr10:73842550(-) A-I      intronic chr10:73842529(-) A-I      intronic chr10:73842355(-) A-I      intronic chr10:73837134(-) A-I      intronic chr10:73842394(-) A-I      intronic chr10:73836994(-) A-I      intronic chr10:73836436(-) A-I      intronic chr10:73842390(-) A-I      intronic chr10:73837000(-) A-I      intronic chr10:73836909(-) A-I      intronic chr10:73837076(-) A-I      intronic chr10:73842361(-) A-I      intronic chr10:73836957(-) A-I      intronic chr10:73836951(-) A-I      intronic chr10:73837125(-) A-I      intronic chr10:73842488(-) A-I      intronic chr10:73834536(-) A-I      intronic chr10:73839069(-) A-I      intronic chr10:73842369(-) A-I      intronic chr10:73834550(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SPOCK2	chr10:73818870-73818871(-) m6A 3'UTR       27773535 chr10:73818917-73818918(-) m6A 3'UTR       27773535 chr10:73819025-73819026(-) m6A 3'UTR       27773535 chr10:73819037-73819038(-) m6A 3'UTR       27773535 chr10:73819166-73819167(-) m6A 3'UTR       27371828 chr10:73819194-73819195(-) m6A 3'UTR       26404942//27371828 chr10:73819223-73819224(-) m6A 3'UTR       26404942//27371828 chr10:73819229-73819230(-) m6A 3'UTR       26404942//27371828 chr10:73819244-73819245(-) m6A 3'UTR       27371828 chr10:73819313-73819314(-) m6A 3'UTR       27371828 chr10:73819357-73819358(-) m6A 3'UTR       27371828 chr10:73819580-73819581(-) m6A 3'UTR       26404942 chr10:73820538-73820539(-) m6A 3'UTR       27773535 chr10:73822399-73822400(-) m6A 3'UTR       25456834//26404942//27773535//27371828 chr10:73822419-73822420(-) m6A 3'UTR       25456834//26404942//27773535//27371828 chr10:73822487-73822488(-) m6A 3'UTR       24284625//25456834//26404942//27773535//27371828//27773536 chr10:73822638-73822639(-) m6A CDS//exon       25456834//27371828 chr10:73822835-73822836(-) m6A CDS//exon       27371828 chr10:73826760-73826761(-) m6A CDS//exon       27773535 chr10:73831997-73831998(-) m6A CDS       27773535 chr10:73832280-73832281(-) m6A CDS       27773535 chr10:73846217-73846218(-) m6A 3'UTR//intron       27371828 chr10:73846508-73846509(-) m6A 3'UTR//exon//intron       27371828 chr10:73846517-73846518(-) m6A 3'UTR//exon//intron       27371828 chr10:73846542-73846543(-) m6A 3'UTR//exon//intron       27371828 chr10:73847986-73847987(-) m6A CDS//exon       27371828 chr10:73848091-73848092(-) m6A 5'UTR//exon       26404942//27371828 chr10:73848097-73848098(-) m6A 5'UTR//exon       25456834//26404942//27371828 chr10:73848112-73848113(-) m6A 5'UTR//exon       25456834//26404942//27371828 chr10:73848137-73848138(-) m6A 5'UTR//exon       25456834//26404942//27371828 chr10:73848178-73848179(-) m6A 5'UTR//exon       25456834//26404942//27773535//27371828 chr10:73848199-73848200(-) m6A 5'UTR//exon       25456834//26404942//27773535//27371828 chr10:73848266-73848267(-) m6A 5'UTR//exon       25456834//27773535//27371828 chr10:73848376-73848377(-) m6A 5'UTR//intron       27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SPOCK2	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART11-3p	Nvp-aew541       11476171

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART11-3p
Interactor2: SPOCK2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg