Detail Information

Basic Information:


  VIRBase ID:  

VHID00339755

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-3p:           HOMER2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART11-3p HOMER2
miRBase
Accession/Entrez ID		 MIMAT0003422 9455
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - ACPD//CPD//DFNA68//HOMER-2//VESL-2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR HOMER2
chr15:83529471(-) A-I      intronic
chr15:83598276(-) A-I      intronic
chr15:83598286(-) A-I      intronic
chr15:83609565(-) A-I      intronic
chr15:83598620(-) A-I      intronic
chr15:83598621(-) A-I      intronic
chr15:83605553(-) A-I      intronic
chr15:83525247(-) A-I      intronic
chr15:83525249(-) A-I      intronic
chr15:83525311(-) A-I      intronic
chr15:83525321(-) A-I      intronic
chr15:83605557(-) A-I      intronic
chr15:83605584(-) A-I      intronic
chr15:83605600(-) A-I      intronic
chr15:83525333(-) A-I      intronic
chr15:83529459(-) A-I      intronic
chr15:83525143(-) A-I      intronic
chr15:83598268(-) A-I      intronic
chr15:83530927(-) A-I      intronic
chr15:83595388(-) A-I      intronic
chr15:83595195(-) A-I      intronic
chr15:83598404(-) A-I      intronic
chr15:83572794(-) A-I      intronic
chr15:83530851(-) A-I      intronic
chr15:83530580(-) A-I      intronic
chr15:83525120(-) A-I      intronic
chr15:83530556(-) A-I      intronic
chr15:83601044(-) A-I      intronic
chr15:83575368(-) A-I      intronic
chr15:83608360(-) A-I      intronic
chr15:83529526(-) A-I      intronic
chr15:83527183(-) A-I      intronic
chr15:83575365(-) A-I      intronic
chr15:83599630(-) A-I      intronic
chr15:83578863(-) A-I      intronic
chr15:83605485(-) A-I      intronic
chr15:83530892(-) A-I      intronic
chr15:83548027(-) A-I      intronic
chr15:83594871(-) A-I      intronic
chr15:83527215(-) A-I      intronic
chr15:83525147(-) A-I      intronic
chr15:83595318(-) A-I      intronic
chr15:83594842(-) A-I      intronic
chr15:83601050(-) A-I      intronic
chr15:83538436(-) A-I      intronic
chr15:83525121(-) A-I      intronic
chr15:83602278(-) A-I      intronic
chr15:83602051(-) A-I      intronic
chr15:83594881(-) A-I      intronic
chr15:83594865(-) A-I      intronic
chr15:83589684(-) A-I      intronic
chr15:83527213(-) A-I      intronic
chr15:83594853(-) A-I      intronic
chr15:83594229(-) A-I      intronic
chr15:83530910(-) A-I      intronic
chr15:83530555(-) A-I      intronic
chr15:83537331(-) A-I      intronic
chr15:83526386(-) A-I      intronic
chr15:83595377(-) A-I      intronic
chr15:83530502(-) A-I      intronic
chr15:83602071(-) A-I      intronic
chr15:83526376(-) A-I      intronic
chr15:83595175(-) A-I      intronic
chr15:83595371(-) A-I      intronic
chr15:83609952(-) A-I      intronic
chr15:83602271(-) A-I      intronic
chr15:83530592(-) A-I      intronic
chr15:83582899(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED HOMER2
chr15:83594229(-) A-I intron -    15342557
chr15:83594842(-) A-I intron -    15342557
chr15:83594853(-) A-I intron -    15342557
chr15:83594865(-) A-I intron -    15342557
chr15:83594871(-) A-I intron -    15342557
chr15:83594881(-) A-I intron -    15342557
chr15:83595175(-) A-I intron -    15342557
chr15:83595195(-) A-I intron -    15342557
chr15:83595318(-) A-I intron -    15342557
chr15:83595371(-) A-I intron -    15342557
chr15:83595377(-) A-I intron -    15342557
chr15:83595388(-) A-I intron -    15342557

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HOMER2
chr15:83510769-83510770(-) m6A 3'UTR       24981863
chr15:83510782-83510783(-) m6A 3'UTR       24981863
chr15:83511980-83511981(-) m6A 3'UTR       24209618
chr15:83511988-83511989(-) m6A 3'UTR       24209618
chr15:83512799-83512800(-) m6A 3'UTR       24981863
chr15:83514326-83514327(-) m6A 3'UTR       22608085
chr15:83514354-83514355(-) m6A 3'UTR       22608085
chr15:83514514-83514515(-) m6A 3'UTR       24209618//25456834//24981863//22608085
chr15:83514566-83514567(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr15:83514573-83514574(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr15:83514637-83514638(-) m6A 3'UTR       24209618//25456834//22608085
chr15:83514685-83514686(-) m6A 3'UTR       24209618//22608085
chr15:83514702-83514703(-) m6A 3'UTR       24209618//22608085
chr15:83514789-83514790(-) m6A 3'UTR       24209618//25456834//27371828//27773536//22608085
chr15:83514810-83514811(-) m6A 3'UTR       24209618//25456834//27773536//22608085
chr15:83514927-83514928(-) m6A 3'UTR       22608085
chr15:83515285-83515286(-) m6A 3'UTR       22608085
chr15:83515308-83515309(-) m6A 3'UTR       22608085
chr15:83515330-83515331(-) m6A 3'UTR       22608085
chr15:83515380-83515381(-) m6A 3'UTR       25456834//24981863//27371828//22608085
chr15:83515414-83515415(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27371828//22608085
chr15:83515425-83515426(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27371828//22608085
chr15:83515444-83515445(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr15:83515492-83515493(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr15:83515499-83515500(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr15:83515516-83515517(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr15:83515547-83515548(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr15:83515569-83515570(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr15:83515639-83515640(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr15:83515671-83515672(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr15:83515688-83515689(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr15:83515695-83515696(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr15:83515723-83515724(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr15:83515767-83515768(-) m6A 3'UTR       24284625//24981863//22608085
chr15:83515817-83515818(-) m6A 3'UTR       24284625//24981863//22608085
chr15:83515891-83515892(-) m6A 3'UTR       24981863//22608085
chr15:83518026-83518027(-) m6A 3'UTR//intron       22608085
chr15:83518053-83518054(-) m6A 3'UTR//intron       22608085
chr15:83518148-83518149(-) m6A 3'UTR//intron       22608085
chr15:83518157-83518158(-) m6A 3'UTR//intron       24981863//22608085
chr15:83518235-83518236(-) m6A 3'UTR//intron       24284625//24981863//22608085
chr15:83518267-83518268(-) m6A 3'UTR//intron       24284625//24981863
chr15:83518342-83518343(-) m6A 3'UTR//intron       24284625//24981863
chr15:83518415-83518416(-) m6A 3'UTR//intron       24284625//24209618//24981863//22608085
chr15:83518603-83518604(-) m6A CDS//exon       24284625//24209618//24981863//27371828//22608085
chr15:83518623-83518624(-) m6A CDS//exon       24284625//24209618//24981863//27371828//22608085
chr15:83518632-83518633(-) m6A CDS//exon       24284625//24209618//24981863//27371828//22608085
chr15:83518641-83518642(-) m6A CDS//exon       24284625//24209618//24981863//27371828//22608085
chr15:83519962-83519963(-) m6A CDS//exon       24284625//24209618//24981863//27371828//22608085
chr15:83520895-83520896(-) m6A CDS//exon       24284625//24209618//24981863//27371828//27773536//22608085
chr15:83520951-83520952(-) m6A CDS//exon       24284625//24209618//24981863//27371828//27773536//22608085
chr15:83520986-83520987(-) m6A CDS//exon       24284625//24209618//24981863//27371828
chr15:83527904-83527905(-) m6A CDS//intron       27773535//27773536
chr15:83532938-83532939(-) m6A CDS//exon       24981863//27773535//27773536
chr15:83532961-83532962(-) m6A CDS//exon       24981863//27773535//27773536
chr15:83544145-83544146(-) m6A CDS//exon       24981863//27773535
chr15:83561470-83561471(-) m6A CDS//exon       24981863//27773535
chr15:83561530-83561531(-) m6A CDS//exon       24981863//27773535//27773536
chr15:83561589-83561590(-) m6A CDS//exon       24981863//27773536
chr15:83567175-83567176(-) m6A exon//intron       27773536
chr15:83567182-83567183(-) m6A exon//intron       27773536
chr15:83627140-83627141(-) m6A exon//intron       27773535
chr15:83627235-83627236(-) m6A exon//intron       27773535
chr15:83627309-83627310(-) m6A exon//intron       27773535
chr15:83627424-83627425(-) m6A exon//intron       27773535
chr15:83627776-83627777(-) m6A exon//intron       27773535
chr15:83627787-83627788(-) m6A exon//intron       27773535
chr15:83627796-83627797(-) m6A exon//intron       27773535
chr15:83627801-83627802(-) m6A exon//intron       27773535
chr15:83627854-83627855(-) m6A exon//intron       22608085
chr15:83627886-83627887(-) m6A exon//intron       22608085
chr15:83627909-83627910(-) m6A exon//intron       22608085
chr15:83654594-83654595(-) m6A exon//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate HOMER2
Exosome Blood     -
Nucleus HCC cell line (HepG2)     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART11-3p
Nvp-aew541       11476171

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART11-3p
Interactor2: HOMER2

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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