Detail Information

Basic Information:


  VIRBase ID:  

VHID00339551

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-3p:           VAMP2:      

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Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART11-3p VAMP2
miRBase
Accession/Entrez ID		 MIMAT0003422 6844
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - NEDHAHM//SYB2//VAMP-2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR VAMP2
chr17:8060702(-) A-I      intronic
chr17:8061536(-) A-I      intronic
chr17:8061566(-) A-I      intronic
chr17:8064412(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase VAMP2
chr17:8062578-8062579(-) m6A 3'UTR       -
chr17:8062689-8062690(-) m6A 3'UTR       -
chr17:8062784-8062785(-) m6A 3'UTR       -
chr17:8062823-8062824(-) m6A 3'UTR       -
chr17:8063258-8063259(-) m6A 3'UTR       27773535
chr17:8063328-8063329(-) m6A 3'UTR       27773535
chr17:8063407-8063408(-) m6A 3'UTR       27773535
chr17:8063635-8063636(-) m6A 3'UTR       27773535
chr17:8063698-8063699(-) m6A 3'UTR       24284625//24981863//27773535//27371828
chr17:8064326-8064327(-) m6A 3'UTR//intron       27773535
chr17:8064363-8064364(-) m6A 3'UTR//intron       -
chr17:8064371-8064372(-) m6A 3'UTR//intron       -
chr17:8064475-8064476(-) m6A 3'UTR//intron       27773535
chr17:8064489-8064490(-) m6A 3'UTR//intron       27773535
chr17:8064522-8064523(-) m6A 3'UTR//intron       27773535
chr17:8064552-8064553(-) m6A 3'UTR//intron       27773535
chr17:8064932-8064933(-) m6A CDS       27371828
chr17:8064972-8064973(-) m6A CDS       27371828
chr17:8065037-8065038(-) m6A CDS       24284625//27773535//27371828
chr17:8065055-8065056(-) m6A CDS       24284625//27773535//27371828//27773536
chr17:8065076-8065077(-) m6A 5'UTR//CDS       24284625//27773535//27371828//27773536
chr17:8065586-8065587(-) m6A 5'UTR//CDS       24284625//24981863//27773535//27371828//27773536
chr17:8065596-8065597(-) m6A 5'UTR//CDS       24284625//24981863//27773535//27371828//27773536
chr17:8065615-8065616(-) m6A 5'UTR//CDS       24284625//24981863//27773535//27371828//27773536
chr17:8065764-8065765(-) m6A CDS//intron       24284625//24981863//27371828//27773536
chr17:8065783-8065784(-) m6A 5'UTR//intron       24284625//25456834//24981863//27371828//27773536
chr17:8065824-8065825(-) m6A 5'UTR//intron       24284625//25456834//27371828//27773536
chr17:8065830-8065831(-) m6A 5'UTR//intron       24284625//25456834//27371828//27773536
chr17:8065886-8065887(-) m6A 5'UTR//intron       27371828
chr17:8066815-8066816(-) m6A 5'UTR       24981863
chr17:8066841-8066842(-) m6A 5'UTR       24981863
chr17:8066860-8066861(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate VAMP2
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART11-3p
Nvp-aew541       11476171

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART11-3p
Interactor2: VAMP2

Evidence Support:


Prediction-Evidence cRep//miRanda
Support Database RepTar//VmiReg

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