Detail Information

Basic Information:


  VIRBase ID:  

VHID00339366

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-3p:           NKTR:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART11-3p NKTR
miRBase
Accession/Entrez ID		 MIMAT0003422 4820
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - p104

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NKTR
chr3:42644338(+) A-I      intronic
chr3:42660076(+) A-I      intronic
chr3:42660175(+) A-I      intronic
chr3:42644354(+) A-I      intronic
chr3:42650513(+) A-I      intronic
chr3:42650540(+) A-I      intronic
chr3:42660198(+) A-I      intronic
chr3:42687026(+) A-I      intronic
chr3:42644648(+) A-I      intronic
chr3:42644615(+) A-I      intronic
chr3:42644596(+) A-I      intronic
chr3:42644581(+) A-I      intronic
chr3:42644580(+) A-I      intronic
chr3:42649666(+) A-I      intronic
chr3:42649608(+) A-I      intronic
chr3:42650607(+) A-I      intronic
chr3:42644313(+) A-I      intronic
chr3:42659588(+) A-I      intronic
chr3:42644475(+) A-I      intronic
chr3:42644459(+) A-I      intronic
chr3:42644450(+) A-I      intronic
chr3:42659580(+) A-I      intronic
chr3:42644347(+) A-I      intronic
chr3:42659712(+) A-I      intronic
chr3:42650417(+) A-I      intronic
chr3:42650481(+) A-I      intronic
chr3:42650503(+) A-I      intronic
chr3:42659706(+) A-I      intronic
chr3:42659750(+) A-I      intronic
chr3:42650363(+) A-I      intronic
chr3:42648328(+) A-I      intronic
chr3:42648271(+) A-I      intronic
chr3:42648266(+) A-I      intronic
chr3:42644447(+) A-I      intronic
chr3:42644427(+) A-I      intronic
chr3:42644420(+) A-I      intronic
chr3:42644397(+) A-I      intronic
chr3:42644310(+) A-I      intronic
chr3:42644244(+) A-I      intronic
chr3:42687056(+) A-I      intronic
chr3:42659685(+) A-I      intronic
chr3:42659728(+) A-I      intronic
chr3:42659723(+) A-I      intronic
chr3:42646356(+) A-I      intronic
chr3:42646281(+) A-I      intronic
chr3:42644676(+) A-I      intronic
chr3:42659732(+) A-I      intronic
chr3:42659758(+) A-I      intronic
chr3:42650500(+) A-I      intronic
chr3:42659785(+) A-I      intronic
chr3:42659792(+) A-I      intronic
chr3:42650473(+) A-I      intronic
chr3:42650469(+) A-I      intronic
chr3:42650419(+) A-I      intronic
chr3:42644643(+) A-I      intronic
chr3:42644359(+) A-I      intronic
chr3:42644357(+) A-I      intronic
chr3:42644349(+) A-I      intronic
chr3:42660037(+) A-I      intronic
chr3:42660006(+) A-I      intronic
chr3:42660011(+) A-I      intronic
chr3:42649582(+) A-I      intronic
chr3:42660030(+) A-I      intronic
chr3:42648222(+) A-I      intronic
chr3:42648370(+) A-I      intronic
chr3:42659995(+) A-I      intronic
chr3:42650422(+) A-I      intronic
chr3:42653446(+) A-I      intronic
chr3:42644344(+) A-I      intronic
chr3:42651598(+) A-I      intronic
chr3:42651597(+) A-I      intronic
chr3:42651562(+) A-I      intronic
chr3:42648267(+) A-I      intronic
chr3:42644358(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NKTR
chr3:42644344(+) A-I intron -    15258596
chr3:42644348(+) A-I intron -    15258596
chr3:42644349(+) A-I intron -    15258596
chr3:42644358(+) A-I intron -    15258596
chr3:42690137(+) T-G intron -    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NKTR
chr3:42642244-42642245(+) m6A 5'UTR//exon       24981863
chr3:42674114-42674115(+) m6A 3'UTR//5'UTR//CDS//exon       27773535
chr3:42674186-42674187(+) m6A 3'UTR//5'UTR//CDS//exon       24981863//27773535//22608085
chr3:42674192-42674193(+) m6A 3'UTR//5'UTR//CDS//exon       24981863//27773535//22608085
chr3:42674216-42674217(+) m6A 3'UTR//5'UTR//CDS//exon       24981863//27773535//22608085
chr3:42674294-42674295(+) m6A 3'UTR//5'UTR//CDS//exon       24981863//27773535//22608085
chr3:42674305-42674306(+) m6A 3'UTR//5'UTR//CDS//exon       24981863//27773535//22608085
chr3:42674326-42674327(+) m6A exon//intron       24981863//27773535//22608085
chr3:42674350-42674351(+) m6A exon//intron       24981863
chr3:42676168-42676169(+) Am 3'UTR//CDS//exon       -
chr3:42678445-42678446(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr3:42678461-42678462(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr3:42678533-42678534(+) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085
chr3:42678545-42678546(+) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//27773535//22608085
chr3:42678551-42678552(+) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//27773535//22608085
chr3:42678691-42678692(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:42678745-42678746(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085
chr3:42678804-42678805(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27773535//22608085
chr3:42678903-42678904(+) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085
chr3:42678929-42678930(+) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085
chr3:42678939-42678940(+) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085
chr3:42678944-42678945(+) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085
chr3:42679061-42679062(+) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//22608085
chr3:42679067-42679068(+) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//22608085
chr3:42679113-42679114(+) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//27773535//22608085
chr3:42679167-42679168(+) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//27773535//22608085
chr3:42679533-42679534(+) m6A 3'UTR//CDS//exon       27773535
chr3:42679564-42679565(+) m6A 3'UTR//CDS//exon       27773535
chr3:42679624-42679625(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr3:42679695-42679696(+) m6A 3'UTR//CDS//exon       24209618//24981863//27773535//22608085
chr3:42679706-42679707(+) m6A 3'UTR//CDS//exon       24209618//24981863//27773535//22608085
chr3:42679717-42679718(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr3:42679773-42679774(+) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//22575960//22608085
chr3:42679852-42679853(+) m6A 3'UTR//CDS       24284625//25456834//24981863//26404942//27773535//22575960//22608085
chr3:42679888-42679889(+) m6A 3'UTR//CDS       24284625//25456834//24981863//26404942//27773535//22575960//22608085
chr3:42679985-42679986(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr3:42680051-42680052(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr3:42680101-42680102(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr3:42680129-42680130(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr3:42680159-42680160(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr3:42680200-42680201(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr3:42680335-42680336(+) m6A 3'UTR//CDS       24284625//24981863//26404942//27773535//22608085
chr3:42680343-42680344(+) m6A 3'UTR//CDS       24284625//24981863//26404942//27773535//22608085
chr3:42680367-42680368(+) m6A 3'UTR//CDS       24284625//24981863//26404942//27773535//22608085
chr3:42680389-42680390(+) m6A 3'UTR//CDS       24284625//24981863//26404942//27773535//22575960//22608085
chr3:42680402-42680403(+) m6A 3'UTR//CDS       24284625//24981863//26404942//27773535//22575960//22608085
chr3:42680459-42680460(+) m6A 3'UTR//CDS       24284625//24981863//26404942//27773535//22575960//22608085
chr3:42680515-42680516(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22575960//22608085
chr3:42680568-42680569(+) m6A 3'UTR//CDS       22608085
chr3:42680628-42680629(+) m6A 3'UTR//CDS       24981863//22608085
chr3:42680671-42680672(+) m6A 3'UTR//CDS       24981863//26404942//27773535//22608085
chr3:42680702-42680703(+) m6A 3'UTR//CDS       24981863//26404942//27773535//22608085
chr3:42680726-42680727(+) m6A 3'UTR//CDS       24981863//26404942//27773535//22608085
chr3:42680774-42680775(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:42680779-42680780(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:42680896-42680897(+) m6A 3'UTR//CDS       24981863//22608085
chr3:42680969-42680970(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:42681045-42681046(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:42681058-42681059(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:42681065-42681066(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:42681162-42681163(+) m6A 3'UTR//CDS       27773535
chr3:42681173-42681174(+) m6A 3'UTR//CDS       27773535
chr3:42681180-42681181(+) m6A 3'UTR//CDS       27773535
chr3:42684044-42684045(+) m6A 3'UTR//CDS       27773535
chr3:42687850-42687851(+) m6A 3'UTR       24981863//27773535
chr3:42687863-42687864(+) m6A 3'UTR       24981863
chr3:42688474-42688475(+) m6A 3'UTR       24284625//24981863//22608085
chr3:42688518-42688519(+) m6A 3'UTR       24284625//24981863//26404942//22608085
chr3:42688581-42688582(+) m6A 3'UTR       24284625
chr3:42690061-42690062(+) m6A 3'UTR       27773535
chr3:42690111-42690112(+) m6A 3'UTR       27773535
chr3:42690181-42690182(+) m6A 3'UTR       27773535
chr3:42690193-42690194(+) m6A 3'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NKTR
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART11-3p
Nvp-aew541       11476171

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART11-3p
Interactor2: NKTR

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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