Detail Information

Basic Information:


  VIRBase ID:  

VHID00339364

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-3p:           SNU13:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART11-3p SNU13
miRBase
Accession/Entrez ID		 MIMAT0003422 4809
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - 15.5K//FA-1//FA1//NHP2L1//NHPX//OTK27//SNRNP15-5//SPAG12//SSFA1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SNU13
chr22:42071580(-) A-I      intronic
chr22:42071639(-) A-I      intronic
chr22:42071585(-) A-I      intronic
chr22:42080915(-) A-I      intronic
chr22:42081058(-) A-I      intronic
chr22:42071523(-) A-I      intronic
chr22:42071840(-) A-I      intronic
chr22:42071456(-) A-I      intronic
chr22:42071494(-) A-I      intronic
chr22:42071498(-) A-I      intronic
chr22:42071522(-) A-I      intronic
chr22:42071537(-) A-I      intronic
chr22:42071599(-) A-I      intronic
chr22:42071621(-) A-I      intronic
chr22:42071629(-) A-I      intronic
chr22:42071866(-) A-I      intronic
chr22:42071883(-) A-I      intronic
chr22:42071893(-) A-I      intronic
chr22:42072029(-) A-I      intronic
chr22:42074246(-) A-I      intronic
chr22:42074251(-) A-I      intronic
chr22:42074258(-) A-I      intronic
chr22:42075394(-) A-I      intronic
chr22:42078885(-) A-I      intronic
chr22:42078903(-) A-I      intronic
chr22:42079443(-) A-I      intronic
chr22:42080770(-) A-I      intronic
chr22:42080902(-) A-I      intronic
chr22:42080933(-) A-I      intronic
chr22:42080941(-) A-I      intronic
chr22:42080942(-) A-I      intronic
chr22:42081059(-) A-I      intronic
chr22:42081077(-) A-I      intronic
chr22:42083139(-) A-I      intronic
chr22:42083138(-) A-I      intronic
chr22:42083128(-) A-I      intronic
chr22:42083057(-) A-I      intronic
chr22:42083056(-) A-I      intronic
chr22:42083028(-) A-I      intronic
chr22:42082085(-) A-I      intronic
chr22:42081909(-) A-I      intronic
chr22:42081889(-) A-I      intronic
chr22:42081758(-) A-I      intronic
chr22:42081628(-) A-I      intronic
chr22:42081561(-) A-I      intronic
chr22:42081540(-) A-I      intronic
chr22:42081340(-) A-I      intronic
chr22:42081291(-) A-I      intronic
chr22:42073429(-) A-I      intronic
chr22:42073479(-) A-I      intronic
chr22:42074091(-) A-I      intronic
chr22:42074104(-) A-I      intronic
chr22:42074150(-) A-I      intronic
chr22:42082850(-) A-I      intronic
chr22:42073434(-) A-I      intronic
chr22:42079185(-) A-I      intronic
chr22:42074118(-) A-I      intronic
chr22:42073294(-) A-I      intronic
chr22:42075503(-) A-I      intronic
chr22:42071851(-) A-I      intronic
chr22:42080997(-) A-I      intronic
chr22:42082866(-) A-I      intronic
chr22:42081076(-) A-I      intronic
chr22:42081847(-) A-I      intronic
chr22:42080833(-) A-I      intronic
chr22:42082693(-) A-I      intronic
chr22:42082768(-) A-I      intronic
chr22:42074120(-) A-I      intronic
chr22:42079182(-) A-I      intronic
chr22:42080914(-) A-I      intronic
chr22:42083156(-) A-I      intronic
chr22:42082107(-) A-I      intronic
chr22:42080075(-) A-I      intronic
chr22:42081824(-) A-I      intronic
chr22:42071935(-) A-I      intronic
chr22:42082759(-) A-I      intronic
chr22:42078727(-) A-I      intronic
chr22:42082928(-) A-I      intronic
chr22:42082769(-) A-I      intronic
chr22:42082849(-) A-I      intronic
chr22:42073324(-) A-I      intronic
chr22:42082855(-) A-I      intronic
chr22:42081807(-) A-I      intronic
chr22:42082799(-) A-I      intronic
chr22:42082503(-) A-I      intronic
chr22:42081318(-) A-I      intronic
chr22:42073447(-) A-I      intronic
chr22:42071603(-) A-I      intronic
chr22:42080976(-) A-I      intronic
chr22:42072007(-) A-I      intronic
chr22:42082590(-) A-I      intronic
chr22:42080848(-) A-I      intronic
chr22:42071605(-) A-I      intronic
chr22:42082800(-) A-I      intronic
chr22:42071503(-) A-I      intronic
chr22:42081440(-) A-I      intronic
chr22:42083233(-) A-I      intronic
chr22:42081910(-) A-I      intronic
chr22:42078846(-) A-I      intronic
chr22:42080929(-) A-I      intronic
chr22:42081107(-) A-I      intronic
chr22:42082834(-) A-I      intronic
chr22:42076839(-) A-I      intronic
chr22:42073373(-) A-I      intronic
chr22:42071892(-) A-I      intronic
chr22:42073524(-) A-I      intronic
chr22:42071524(-) A-I      intronic
chr22:42082901(-) A-I      intronic
chr22:42082648(-) A-I      intronic
chr22:42075240(-) A-I      intronic
chr22:42081850(-) A-I      intronic
chr22:42083121(-) A-I      intronic
chr22:42083234(-) A-I      intronic
chr22:42073380(-) A-I      intronic
chr22:42073405(-) A-I      intronic
chr22:42077889(-) A-I      intronic
chr22:42074252(-) A-I      intronic
chr22:42071502(-) A-I      intronic
chr22:42073272(-) A-I      intronic
chr22:42074112(-) A-I      intronic
chr22:42075516(-) A-I      intronic
chr22:42071514(-) A-I      intronic
chr22:42081048(-) A-I      intronic
chr22:42083166(-) A-I      intronic
chr22:42081526(-) A-I      intronic
chr22:42075508(-) A-I      intronic
chr22:42083098(-) A-I      intronic
chr22:42082858(-) A-I      intronic
chr22:42081308(-) A-I      intronic
chr22:42073365(-) A-I      intronic
chr22:42073389(-) A-I      intronic
chr22:42075398(-) A-I      intronic
chr22:42082808(-) A-I      intronic
chr22:42082576(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SNU13
chr22:42070081-42070082(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr22:42070095-42070096(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr22:42070118-42070119(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr22:42070160-42070161(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr22:42070199-42070200(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr22:42070286-42070287(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr22:42071099-42071100(-) m6A CDS//exon       22575960
chr22:42071133-42071134(-) Gm CDS//exon       -
chr22:42071190-42071191(-) m6A CDS//exon       22575960
chr22:42076300-42076301(-) m6A CDS//exon       24981863//22575960
chr22:42077250-42077251(-) m6A exon//intron       24981863//22575960
chr22:42077295-42077296(-) m6A exon//intron       24284625//24981863
chr22:42078370-42078371(-) m6A 5'UTR//exon//intron       24981863
chr22:42078379-42078380(-) m6A 5'UTR//exon//intron       24981863
chr22:42078417-42078418(-) m6A 5'UTR//exon//intron       24981863
chr22:42078426-42078427(-) m6A 5'UTR//exon//intron       24981863
chr22:42083834-42083835(-) m6A exon//intron       27773535
chr22:42083896-42083897(-) m6A exon//intron       27773535
chr22:42083911-42083912(-) m6A exon//intron       27773535
chr22:42083957-42083958(-) m6A exon//intron       27773535
chr22:42084104-42084105(-) m6A exon//intron       27773535
chr22:42084129-42084130(-) m6A exon//intron       27773535
chr22:42084166-42084167(-) m6A exon//intron       27371828
chr22:42084236-42084237(-) m6A exon//intron       27371828
chr22:42084273-42084274(-) m6A exon//intron       24981863//27371828
chr22:42084808-42084809(-) m6A 5'UTR//exon//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SNU13
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART11-3p
Nvp-aew541       11476171

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART11-3p
Interactor2: SNU13

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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