Detail Information

Basic Information:


  VIRBase ID:  

VHID00339138

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-3p:           E2F1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART11-3p E2F1
miRBase
Accession/Entrez ID		 MIMAT0003422 1869
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - E2F-1//RBAP1//RBBP3//RBP3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR E2F1
chr20:32271515(-) A-I      intronic
chr20:32269013(-) A-I      intronic
chr20:32269044(-) A-I      intronic
chr20:32268919(-) A-I      intronic
chr20:32269077(-) A-I      intronic
chr20:32269085(-) A-I      intronic
chr20:32265761(-) A-I      intronic
chr20:32269072(-) A-I      intronic
chr20:32265610(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED E2F1
chr20:32269009(-) A-G intron -    22484847
chr20:32269013(-) A-G intron -    22484847
chr20:32269044(-) A-G intron -    22484847
chr20:32269077(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase E2F1
chr20:32263625-32263626(-) m6A 3'UTR       24284625//27773535
chr20:32263675-32263676(-) m6A 3'UTR       24284625//27773535
chr20:32263792-32263793(-) m6A 3'UTR       24981863//27773535
chr20:32263837-32263838(-) m6A 3'UTR       24284625//24981863//27773535
chr20:32264440-32264441(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828
chr20:32264522-32264523(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr20:32264559-32264560(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr20:32264583-32264584(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr20:32264682-32264683(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr20:32264736-32264737(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr20:32265011-32265012(-) m6A CDS       24284625//27773535
chr20:32265045-32265046(-) m6A CDS       24284625//27773535
chr20:32265072-32265073(-) m6A CDS       24284625//27773535
chr20:32266021-32266022(-) m6A CDS       27371828
chr20:32266069-32266070(-) m6A CDS       27371828
chr20:32266105-32266106(-) m6A CDS       27371828//27773536
chr20:32267575-32267576(-) m6A CDS       27371828//27773536
chr20:32267744-32267745(-) m6A CDS       24284625
chr20:32268197-32268198(-) m6A CDS       24284625//27773536
chr20:32268205-32268206(-) m6A CDS       24284625//27773536
chr20:32274187-32274188(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate E2F1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352
Ribosome-free cytosol Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART11-3p
Nvp-aew541       11476171

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART11-3p
Interactor2: E2F1

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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