Basic Information:

  VIRBase ID:  

VHID00337193

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-5p:  MIMAT0003421          USP35:  NM_020798     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART11-5p	USP35
miRBase Accession/Entrez ID	MIMAT0003421	57558
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	USP35	chr11:77909824(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	USP35	chr11:77910222(+) A-I intron -    21960545

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	USP35	chr11:77900034-77900035(+) m6A 5'UTR//exon       25456834//24981863 chr11:77900074-77900075(+) m6A 5'UTR//exon       24981863 chr11:77900113-77900114(+) m6A 5'UTR//exon       - chr11:77920535-77920536(+) m6A 3'UTR//CDS//exon       - chr11:77920684-77920685(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr11:77920759-77920760(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr11:77920835-77920836(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22608085 chr11:77920852-77920853(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22608085 chr11:77920888-77920889(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr11:77920945-77920946(+) m1A 3'UTR//CDS//exon       26863196 chr11:77920975-77920976(+) m1A 3'UTR//CDS//exon       26863196 chr11:77921047-77921048(+) m1A 3'UTR//CDS//exon       26863196 chr11:77921067-77921068(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr11:77921098-77921099(+) m1A 3'UTR//CDS//exon       26863196 chr11:77921101-77921102(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr11:77921118-77921119(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr11:77921154-77921155(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22608085 chr11:77921188-77921189(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22608085 chr11:77921233-77921234(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22608085 chr11:77921538-77921539(+) m6A 3'UTR//CDS//exon       24284625 chr11:77921563-77921564(+) m6A 3'UTR//CDS//exon       24284625//24981863 chr11:77921647-77921648(+) m6A 3'UTR//CDS//exon       24284625//24981863 chr11:77921724-77921725(+) m6A 3'UTR//CDS//exon       - chr11:77921746-77921747(+) m6A 3'UTR//CDS//exon       - chr11:77921770-77921771(+) m6A 3'UTR//CDS//exon       - chr11:77924776-77924777(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22608085 chr11:77924846-77924847(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22608085 chr11:77924864-77924865(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr11:77925024-77925025(+) m6A 3'UTR//exon       24284625//24981863 chr11:77925061-77925062(+) m6A 3'UTR//exon       24284625//24981863 chr11:77925181-77925182(+) m6A 3'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART11-5p	Exosome B cell line (Raji)     21505438
	USP35	Exosome Blood     - Nucleolus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART11-5p
Interactor2: USP35

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg