Basic Information:

  VIRBase ID:  

VHID00336546

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-5p:  MIMAT0003421          LRP12:  NM_001135703     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART11-5p	LRP12
miRBase Accession/Entrez ID	MIMAT0003421	29967
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	MIG13A//ST7

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LRP12	chr8:105563830(-) A-I      intronic chr8:105523357(-) A-I      intronic chr8:105523332(-) A-I      intronic chr8:105556112(-) A-I      intronic chr8:105561854(-) A-I      intronic chr8:105523423(-) A-I      intronic chr8:105524462(-) A-I      intronic chr8:105561911(-) A-I      intronic chr8:105524397(-) A-I      intronic chr8:105561089(-) A-I      intronic chr8:105560934(-) A-I      intronic chr8:105524463(-) A-I      intronic chr8:105561859(-) A-I      intronic chr8:105560935(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LRP12	chr8:105501915-105501916(-) m6A 3'UTR//exon       27773535 chr8:105502047-105502048(-) m6A 3'UTR//exon       27773535 chr8:105502825-105502826(-) m6A 3'UTR//exon       24981863//27773535 chr8:105502964-105502965(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085 chr8:105503059-105503060(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr8:105503071-105503072(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr8:105503101-105503102(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr8:105503126-105503127(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr8:105503206-105503207(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr8:105503222-105503223(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr8:105503335-105503336(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr8:105503513-105503514(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr8:105503569-105503570(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085 chr8:105503669-105503670(-) m6A CDS//exon       24209618//24981863//22608085 chr8:105509400-105509401(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr8:105509439-105509440(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr8:105509557-105509558(-) m6A 5'UTR//CDS       24284625//24209618//24981863//27773535//22608085 chr8:105509735-105509736(-) m6A 5'UTR//CDS       24284625//24209618//24981863//27773535//22608085 chr8:105509864-105509865(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr8:105509910-105509911(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr8:105509949-105509950(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr8:105510021-105510022(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr8:105510054-105510055(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr8:105510290-105510291(-) m6A CDS//exon       24209618 chr8:105518064-105518065(-) m6A exon//intron       27773535 chr8:105518085-105518086(-) m6A exon//intron       27773535 chr8:105518094-105518095(-) m6A exon//intron       27773535 chr8:105518999-105519000(-) m6A exon//intron       27773535 chr8:105519053-105519054(-) m6A exon//intron       27773535 chr8:105519067-105519068(-) m6A exon//intron       27773535 chr8:105519079-105519080(-) m6A exon//intron       27773535 chr8:105519099-105519100(-) m6A exon//intron       27773535 chr8:105521290-105521291(-) m6A CDS//exon       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART11-5p	Exosome B cell line (Raji)     21505438
	LRP12	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART11-5p
Interactor2: LRP12

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg