Detail Information

Basic Information:


  VIRBase ID:  

VHID00336441

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-5p:           TIMM9:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART11-5p TIMM9
miRBase
Accession/Entrez ID		 MIMAT0003421 26520
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - TIM9//TIM9A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TIMM9
chr14:58892778(-) A-I      intronic
chr14:58889594(-) A-I      intronic
chr14:58889595(-) A-I      intronic
chr14:58889630(-) A-I      intronic
chr14:58878018(-) A-I      intronic
chr14:58889588(-) A-I      intronic
chr14:58877994(-) A-I      intronic
chr14:58886781(-) A-I      intronic
chr14:58881293(-) A-I      intronic
chr14:58890176(-) A-I      intronic
chr14:58892759(-) A-I      intronic
chr14:58881307(-) A-I      intronic
chr14:58878042(-) A-I      intronic
chr14:58878128(-) A-I      intronic
chr14:58878929(-) A-I      intronic
chr14:58889107(-) A-I      intronic
chr14:58890186(-) A-I      intronic
chr14:58886727(-) A-I      intronic
chr14:58878104(-) A-I      intronic
chr14:58886741(-) A-I      intronic
chr14:58889702(-) A-I      intronic
chr14:58878998(-) A-I      intronic
chr14:58890088(-) A-I      intronic
chr14:58892029(-) A-I      intronic
chr14:58892669(-) A-I      intronic
chr14:58890226(-) A-I      intronic
chr14:58881221(-) A-I      intronic
chr14:58878389(-) A-I      intronic
chr14:58883582(-) A-I      intronic
chr14:58883596(-) A-I      intronic
chr14:58890033(-) A-I      intronic
chr14:58883608(-) A-I      intronic
chr14:58886361(-) A-I      intronic
chr14:58889011(-) A-I      intronic
chr14:58889600(-) A-I      intronic
chr14:58889691(-) A-I      intronic
chr14:58878434(-) A-I      intronic
chr14:58890124(-) A-I      intronic
chr14:58878908(-) A-I      intronic
chr14:58878492(-) A-I      intronic
chr14:58878079(-) A-I      intronic
chr14:58892752(-) A-I      intronic
chr14:58877949(-) A-I      intronic
chr14:58892593(-) A-I      intronic
chr14:58881211(-) A-I      intronic
chr14:58876803(-) A-I      intronic
chr14:58876569(-) A-I      intronic
chr14:58878103(-) A-I      intronic
chr14:58876563(-) A-I      intronic
chr14:58880482(-) A-I      intronic
chr14:58891962(-) A-I      intronic
chr14:58892711(-) A-I      intronic
chr14:58886455(-) A-I      intronic
chr14:58890150(-) A-I      intronic
chr14:58889015(-) A-I      intronic
chr14:58878473(-) A-I      intronic
chr14:58878486(-) A-I      intronic
chr14:58892114(-) A-I      intronic
chr14:58880491(-) A-I      intronic
chr14:58880557(-) A-I      intronic
chr14:58890114(-) A-I      intronic
chr14:58878421(-) A-I      intronic
chr14:58890199(-) A-I      intronic
chr14:58893092(-) A-I      intronic
chr14:58890018(-) A-I      intronic
chr14:58880561(-) A-I      intronic
chr14:58878474(-) A-I      intronic
chr14:58877945(-) A-I      intronic
chr14:58890171(-) A-I      intronic
chr14:58889711(-) A-I      intronic
chr14:58878544(-) A-I      intronic
chr14:58890108(-) A-I      intronic
chr14:58880678(-) A-I      intronic
chr14:58881441(-) A-I      intronic
chr14:58877944(-) A-I      intronic
chr14:58877921(-) A-I      intronic
chr14:58892649(-) A-I      intronic
chr14:58876656(-) A-I      intronic
chr14:58876457(-) A-I      intronic
chr14:58881334(-) A-I      intronic
chr14:58876435(-) A-I      intronic
chr14:58880711(-) A-I      intronic
chr14:58890070(-) A-I      intronic
chr14:58878401(-) A-I      intronic
chr14:58892713(-) A-I      intronic
chr14:58889741(-) A-I      intronic
chr14:58878044(-) A-I      intronic
chr14:58879374(-) A-I      intronic
chr14:58892640(-) A-I      intronic
chr14:58893179(-) A-I      intronic
chr14:58881356(-) A-I      intronic
chr14:58879086(-) A-I      intronic
chr14:58879064(-) A-I      intronic
chr14:58878350(-) A-I      intronic
chr14:58893034(-) A-I      intronic
chr14:58893062(-) A-I      intronic
chr14:58889066(-) A-I      intronic
chr14:58892586(-) A-I      intronic
chr14:58890181(-) A-I      intronic
chr14:58876626(-) A-I      intronic
chr14:58884162(-) A-I      intronic
chr14:58883581(-) A-I      intronic
chr14:58878891(-) A-I      intronic
chr14:58885927(-) A-I      intronic
chr14:58886456(-) A-I      intronic
chr14:58878527(-) A-I      intronic
chr14:58879031(-) A-I      intronic
chr14:58878984(-) A-I      intronic
chr14:58891418(-) A-I      intronic
chr14:58881419(-) A-I      intronic
chr14:58889665(-) A-I      intronic
chr14:58892652(-) A-I      intronic
chr14:58876412(-) A-I      intronic
chr14:58878330(-) A-I      intronic
chr14:58889795(-) A-I      intronic
chr14:58888972(-) A-I      intronic
chr14:58878430(-) A-I      intronic
chr14:58892577(-) A-I      intronic
chr14:58889601(-) A-I      intronic
chr14:58880536(-) A-I      intronic
chr14:58878395(-) A-I      intronic
chr14:58878038(-) A-I      intronic
chr14:58881273(-) A-I      intronic
chr14:58877909(-) A-I      intronic
chr14:58880662(-) A-I      intronic
chr14:58891894(-) A-I      intronic
chr14:58888971(-) A-I      intronic
chr14:58876744(-) A-I      intronic
chr14:58883591(-) A-I      intronic
chr14:58889071(-) A-I      intronic
chr14:58881408(-) A-I      intronic
chr14:58889610(-) A-I      intronic
chr14:58876958(-) A-I      intronic
chr14:58893125(-) A-I      intronic
chr14:58886512(-) A-I      intronic
chr14:58892157(-) A-I      intronic
chr14:58893088(-) A-I      intronic
chr14:58889735(-) A-I      intronic
chr14:58886373(-) A-I      intronic
chr14:58876681(-) A-I      intronic
chr14:58876692(-) A-I      intronic
chr14:58879131(-) A-I      intronic
chr14:58876722(-) A-I      intronic
chr14:58893098(-) A-I      intronic
chr14:58879447(-) A-I      intronic
chr14:58889678(-) A-I      intronic
chr14:58886436(-) A-I      intronic
chr14:58892753(-) A-I      intronic
chr14:58892580(-) A-I      intronic
chr14:58878009(-) A-I      intronic
chr14:58892592(-) A-I      intronic
chr14:58893190(-) A-I      intronic
chr14:58889664(-) A-I      intronic
chr14:58893195(-) A-I      intronic
chr14:58891463(-) A-I      intronic
chr14:58889979(-) A-I      intronic
chr14:58879024(-) A-I      intronic
chr14:58879130(-) A-I      intronic
chr14:58876632(-) A-I      intronic
chr14:58891528(-) A-I      intronic
chr14:58890189(-) A-I      intronic
chr14:58889620(-) A-I      intronic
chr14:58879511(-) A-I      intronic
chr14:58879376(-) A-I      intronic
chr14:58886065(-) A-I      intronic
chr14:58878343(-) A-I      intronic
chr14:58889012(-) A-I      intronic
chr14:58881344(-) A-I      intronic
chr14:58889970(-) A-I      intronic
chr14:58878385(-) A-I      intronic
chr14:58878988(-) A-I      intronic
chr14:58881299(-) A-I      intronic
chr14:58892722(-) A-I      intronic
chr14:58886379(-) A-I      intronic
chr14:58878992(-) A-I      intronic
chr14:58877135(-) A-I      intronic
chr14:58878017(-) A-I      intronic
chr14:58889106(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TIMM9
chr14:58877135(-) A-G intron -    22484847
chr14:58879031(-) A-G intron -    22484847
chr14:58879064(-) A-G intron -    22484847
chr14:58892157(-) A-G intron -    22484847
chr14:58892586(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TIMM9
chr14:58875477-58875478(-) m6A 3'UTR//exon       24981863//27773535
chr14:58875600-58875601(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr14:58875612-58875613(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:58875687-58875688(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:58875732-58875733(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:58875772-58875773(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:58875871-58875872(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22608085
chr14:58877569-58877570(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr14:58877591-58877592(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr14:58877603-58877604(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr14:58877616-58877617(-) m6A CDS//exon       24284625//24981863//27773535
chr14:58877626-58877627(-) m6A CDS//exon       24284625//24981863//27773535
chr14:58877637-58877638(-) m6A CDS//exon       24981863//27773535
chr14:58878627-58878628(-) m6A CDS//exon//intron       24981863//27773535
chr14:58878712-58878713(-) m6A 5'UTR//intron       24981863
chr14:58890742-58890743(-) m6A 5'UTR//exon//intron       24981863//27773535
chr14:58890753-58890754(-) m6A 5'UTR//exon//intron       24981863//27773535
chr14:58890770-58890771(-) m6A 5'UTR//exon//intron       24981863//27773535
chr14:58890789-58890790(-) m6A 5'UTR//exon//intron       24981863//27773535
chr14:58893855-58893856(-) m6A 5'UTR//exon//intron       24284625//24981863//27773535//27371828
chr14:58894202-58894203(-) m6A 5'UTR//exon       22608085
chr14:58894225-58894226(-) m6A 5'UTR//exon       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BART11-5p
Exosome B cell line (Raji)     21505438
TIMM9
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART11-5p
Interactor2: TIMM9

Evidence Support:


Prediction-Evidence miRanda//PITA
Support Database VmiReg

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