Basic Information:

  VIRBase ID:  

VHID00336355

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-5p:  MIMAT0003421          ATXN10:  NM_013236     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART11-5p	ATXN10
miRBase Accession/Entrez ID	MIMAT0003421	25814
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	E46L//HUMEEP//SCA10

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ATXN10	chr22:46079178(+) A-I      intronic chr22:46150624(+) A-I      intronic chr22:46213309(+) A-I      intronic chr22:46126364(+) A-I      intronic chr22:46126377(+) A-I      intronic chr22:46126591(+) A-I      intronic chr22:46129373(+) A-I      intronic chr22:46076553(+) A-I      intronic chr22:46091474(+) A-I      intronic chr22:46129460(+) A-I      intronic chr22:46129463(+) A-I      intronic chr22:46076596(+) A-I      intronic chr22:46076606(+) A-I      intronic chr22:46079957(+) A-I      intronic chr22:46082595(+) A-I      intronic chr22:46090406(+) A-I      intronic chr22:46090582(+) A-I      intronic chr22:46191360(+) A-I      intronic chr22:46091038(+) A-I      intronic chr22:46130865(+) A-I      intronic chr22:46091045(+) A-I      intronic chr22:46091093(+) A-I      intronic chr22:46091478(+) A-I      intronic chr22:46095395(+) A-I      intronic chr22:46111910(+) A-I      intronic chr22:46111996(+) A-I      intronic chr22:46111997(+) A-I      intronic chr22:46112024(+) A-I      intronic chr22:46112043(+) A-I      intronic chr22:46112365(+) A-I      intronic chr22:46112417(+) A-I      intronic chr22:46122799(+) A-I      intronic chr22:46126009(+) A-I      intronic chr22:46126017(+) A-I      intronic chr22:46126062(+) A-I      intronic chr22:46126144(+) A-I      intronic chr22:46126357(+) A-I      intronic chr22:46129466(+) A-I      intronic chr22:46130858(+) A-I      intronic chr22:46146026(+) A-I      intronic chr22:46146052(+) A-I      intronic chr22:46146205(+) A-I      intronic chr22:46155307(+) A-I      intronic chr22:46155312(+) A-I      intronic chr22:46155313(+) A-I      intronic chr22:46155342(+) A-I      intronic chr22:46155346(+) A-I      intronic chr22:46155399(+) A-I      intronic chr22:46169402(+) A-I      intronic chr22:46169456(+) A-I      intronic chr22:46169523(+) A-I      intronic chr22:46170558(+) A-I      intronic chr22:46170593(+) A-I      intronic chr22:46170648(+) A-I      intronic chr22:46091083(+) A-I      intronic chr22:46170732(+) A-I      intronic chr22:46175983(+) A-I      intronic chr22:46176057(+) A-I      intronic chr22:46176151(+) A-I      intronic chr22:46146980(+) A-I      intronic chr22:46150505(+) A-I      intronic chr22:46170725(+) A-I      intronic chr22:46150523(+) A-I      intronic chr22:46112463(+) A-I      intronic chr22:46150557(+) A-I      intronic chr22:46150596(+) A-I      intronic chr22:46191438(+) A-I      intronic chr22:46201814(+) A-I      intronic chr22:46235985(+) A-I      intronic chr22:46150620(+) A-I      intronic chr22:46152137(+) A-I      intronic chr22:46152142(+) A-I      intronic chr22:46152143(+) A-I      intronic chr22:46152234(+) A-I      intronic chr22:46155118(+) A-I      intronic chr22:46155137(+) A-I      intronic chr22:46147085(+) A-I      intronic chr22:46090555(+) A-I      intronic chr22:46119574(+) A-I      intronic chr22:46146891(+) A-I      intronic chr22:46126048(+) A-I      intronic chr22:46170557(+) A-I      intronic chr22:46119607(+) A-I      intronic chr22:46150470(+) A-I      intronic chr22:46129551(+) A-I      intronic chr22:46091077(+) A-I      intronic chr22:46079048(+) A-I      intronic chr22:46112119(+) A-I      intronic chr22:46126053(+) A-I      intronic chr22:46112014(+) A-I      intronic chr22:46079909(+) A-I      intronic chr22:46076620(+) A-I      intronic chr22:46091608(+) A-I      intronic chr22:46126578(+) A-I      intronic chr22:46079935(+) A-I      intronic chr22:46122751(+) A-I      intronic chr22:46078437(+) A-I      intronic chr22:46123450(+) A-I      intronic chr22:46146185(+) A-I      intronic chr22:46143878(+) A-I      intronic chr22:46150588(+) A-I      intronic chr22:46146092(+) A-I      intronic chr22:46119616(+) A-I      intronic chr22:46126441(+) A-I      intronic chr22:46112357(+) A-I      intronic chr22:46152208(+) A-I      intronic chr22:46117696(+) A-I      intronic chr22:46129548(+) A-I      intronic chr22:46091610(+) A-I      intronic chr22:46091560(+) A-I      intronic chr22:46125962(+) A-I      intronic chr22:46091136(+) A-I      intronic chr22:46170580(+) A-I      intronic chr22:46112316(+) A-I      intronic chr22:46129353(+) A-I      intronic chr22:46126378(+) A-I      intronic chr22:46117707(+) A-I      intronic chr22:46146976(+) A-I      intronic chr22:46082578(+) A-I      intronic chr22:46091170(+) A-I      intronic chr22:46150592(+) A-I      intronic chr22:46090979(+) A-I      intronic chr22:46104661(+) A-I      intronic chr22:46146244(+) A-I      intronic chr22:46143202(+) A-I      intronic chr22:46148662(+) A-I      intronic chr22:46079901(+) A-I      intronic chr22:46145680(+) A-I      intronic chr22:46170775(+) A-I      intronic chr22:46112345(+) A-I      intronic chr22:46170653(+) A-I      intronic chr22:46126394(+) A-I      intronic chr22:46143979(+) A-I      intronic chr22:46126338(+) A-I      intronic chr22:46148888(+) A-I      intronic chr22:46111961(+) A-I      intronic chr22:46112445(+) A-I      intronic chr22:46147046(+) A-I      intronic chr22:46213414(+) A-I      intronic chr22:46126066(+) A-I      intronic chr22:46104659(+) A-I      intronic chr22:46213261(+) A-I      intronic chr22:46111938(+) A-I      intronic chr22:46129557(+) A-I      intronic chr22:46126440(+) A-I      intronic chr22:46150656(+) A-I      intronic chr22:46126103(+) A-I      intronic chr22:46112315(+) A-I      intronic chr22:46126064(+) A-I      intronic chr22:46170769(+) A-I      intronic chr22:46076579(+) A-I      intronic chr22:46169614(+) A-I      intronic chr22:46129405(+) A-I      intronic chr22:46143290(+) A-I      intronic chr22:46078429(+) A-I      intronic chr22:46170555(+) A-I      intronic chr22:46170585(+) A-I      intronic chr22:46078970(+) A-I      intronic chr22:46170651(+) A-I      intronic chr22:46126065(+) A-I      intronic chr22:46169601(+) A-I      intronic chr22:46169547(+) A-I      intronic chr22:46143285(+) A-I      intronic chr22:46152050(+) A-I      intronic chr22:46170549(+) A-I      intronic chr22:46111919(+) A-I      intronic chr22:46082445(+) A-I      intronic chr22:46091008(+) A-I      intronic chr22:46082451(+) A-I      intronic chr22:46146950(+) A-I      intronic chr22:46090587(+) A-I      intronic chr22:46152239(+) A-I      intronic chr22:46126519(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ATXN10	chr22:46089726(+) C-T intron -    22484847 chr22:46143285(+) A-G intron -    22484847 chr22:46143779(+) A-G intron -    22484847 chr22:46150470(+) A-G intron -    22484847 chr22:46169601(+) A-G intron -    22484847 chr22:46169614(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ATXN10	chr22:46068007-46068008(+) m6A CDS       24284625//22575960 chr22:46068055-46068056(+) m6A CDS       22575960 chr22:46068588-46068589(+) Cm intron       - chr22:46125448-46125449(+) Tm CDS//exon       - chr22:46238903-46238904(+) m6A CDS//exon       - chr22:46238915-46238916(+) m6A CDS//exon       - chr22:46238927-46238928(+) m6A CDS//exon       - chr22:46238955-46238956(+) m6A CDS//exon       - chr22:46239044-46239045(+) m6A CDS//exon       27773535 chr22:46239555-46239556(+) m6A 3'UTR       27773535 chr22:46239832-46239833(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART11-5p	Exosome B cell line (Raji)     21505438
	ATXN10	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART11-5p
Interactor2: ATXN10

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg