Detail Information

Basic Information:


  VIRBase ID:  

VHID00334516

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-5p:           IMPA1:      

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Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART11-5p IMPA1
miRBase
Accession/Entrez ID		 MIMAT0003421 3612
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - IMP//IMPA//MRT59

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR IMPA1
chr8:82580219(-) A-I      intronic
chr8:82580187(-) A-I      intronic
chr8:82580264(-) A-I      intronic
chr8:82580728(-) A-I      intronic
chr8:82589160(-) A-I      intronic
chr8:82589096(-) A-I      intronic
chr8:82589368(-) A-I      intronic
chr8:82589433(-) A-I      intronic
chr8:82590722(-) A-I      intronic
chr8:82580197(-) A-I      intronic
chr8:82590759(-) A-I      intronic
chr8:82589508(-) A-I      intronic
chr8:82589505(-) A-I      intronic
chr8:82590844(-) A-I      intronic
chr8:82590926(-) A-I      intronic
chr8:82580088(-) A-I      intronic
chr8:82589567(-) A-I      intronic
chr8:82569605(-) A-I      3'UTR
chr8:82569966(-) A-I      3'UTR
chr8:82569649(-) A-I      3'UTR
chr8:82569547(-) A-I      3'UTR
chr8:82569577(-) A-I      3'UTR
chr8:82569578(-) A-I      3'UTR
chr8:82569587(-) A-I      3'UTR
chr8:82590805(-) A-I      intronic
chr8:82589146(-) A-I      intronic
chr8:82589055(-) A-I      intronic
chr8:82590888(-) A-I      intronic
chr8:82580574(-) A-I      intronic
chr8:82589428(-) A-I      intronic
chr8:82590827(-) A-I      intronic
chr8:82590803(-) A-I      intronic
chr8:82580745(-) A-I      intronic
chr8:82589028(-) A-I      intronic
chr8:82570013(-) A-I      3'UTR
chr8:82569692(-) A-I      3'UTR
chr8:82570086(-) A-I      3'UTR
chr8:82569604(-) A-I      3'UTR
chr8:82569733(-) A-I      3'UTR
chr8:82569645(-) A-I      3'UTR
chr8:82580814(-) A-I      intronic
chr8:82590927(-) A-I      intronic
chr8:82580733(-) A-I      intronic
chr8:82589147(-) A-I      intronic
chr8:82589487(-) A-I      intronic
chr8:82589512(-) A-I      intronic
chr8:82588963(-) A-I      intronic
chr8:82589052(-) A-I      intronic
chr8:82589427(-) A-I      intronic
chr8:82589106(-) A-I      intronic
chr8:82589469(-) A-I      intronic
chr8:82589625(-) A-I      intronic
chr8:82589479(-) A-I      intronic
chr8:82590864(-) A-I      intronic
chr8:82590670(-) A-I      intronic
chr8:82589507(-) A-I      intronic
chr8:82589104(-) A-I      intronic
chr8:82589602(-) A-I      intronic
chr8:82589537(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED IMPA1
chr8:82589002(-) A-I intron -    22327324
chr8:82570086(-) A-G exon 3'UTR    22484847
chr8:82580733(-) A-G intron -    22484847
chr8:82580745(-) A-G intron -    22484847
chr8:82580814(-) A-G intron -    22484847
chr8:82589002(-) A-G intron -    22484847
chr8:82589052(-) A-G intron -    22484847
chr8:82589055(-) A-G intron -    22484847
chr8:82589468(-) A-G intron -    22484847
chr8:82589479(-) A-G intron -    22484847
chr8:82589487(-) A-G intron -    22484847
chr8:82589512(-) A-G intron -    22484847
chr8:82589625(-) A-G intron -    22484847
chr8:82590805(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase IMPA1
chr8:82586390-82586391(-) m6A exon//intron       27773535
chr8:82586539-82586540(-) m6A exon//intron       27773535
chr8:82586575-82586576(-) m6A exon//intron       27773535
chr8:82586993-82586994(-) m6A 3'UTR//intron       27773535
chr8:82587003-82587004(-) m6A 3'UTR//intron       27773535
chr8:82587058-82587059(-) m6A CDS//intron       27773535
chr8:82598031-82598032(-) m6A CDS//intron       24981863
chr8:82598041-82598042(-) m6A CDS//intron       24981863
chr8:82598047-82598048(-) m6A CDS//intron       24981863
chr8:82598102-82598103(-) m6A CDS//intron       24981863
chr8:82598575-82598576(-) m6A 5'UTR       24981863
chr8:82598672-82598673(-) m6A 5'UTR       27773535//22608085
chr8:82598723-82598724(-) m6A 5'UTR       27773535//22608085
chr8:82598740-82598741(-) m6A 5'UTR       27773535//22608085
chr8:82598756-82598757(-) m6A 5'UTR       27773535//22608085
chr8:82598820-82598821(-) m6A 5'UTR       27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BART11-5p
Exosome B cell line (Raji)     21505438
IMPA1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART11-5p
Interactor2: IMPA1

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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