Detail Information

Basic Information:


  VIRBase ID:  

VHID00334295

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART11-5p:           ERCC6:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART11-5p ERCC6
miRBase
Accession/Entrez ID		 MIMAT0003421 2074
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - ARMD5//CKN2//COFS//COFS1//CSB//CSB-PGBD3//POF11//RAD26//UVSS1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ERCC6
chr10:50733619(-) A-I      intronic
chr10:50733638(-) A-I      intronic
chr10:50733580(-) A-I      intronic
chr10:50715492(-) A-I      intronic
chr10:50715475(-) A-I      intronic
chr10:50715474(-) A-I      intronic
chr10:50715505(-) A-I      intronic
chr10:50715465(-) A-I      intronic
chr10:50715463(-) A-I      intronic
chr10:50733586(-) A-I      intronic
chr10:50744157(-) A-I      intronic
chr10:50715458(-) A-I      intronic
chr10:50733587(-) A-I      intronic
chr10:50733594(-) A-I      intronic
chr10:50734787(-) A-I      intronic
chr10:50734786(-) A-I      intronic
chr10:50733602(-) A-I      intronic
chr10:50734769(-) A-I      intronic
chr10:50734762(-) A-I      intronic
chr10:50734743(-) A-I      intronic
chr10:50692734(-) A-I      intronic
chr10:50725736(-) A-I      intronic
chr10:50725722(-) A-I      intronic
chr10:50704588(-) A-I      intronic
chr10:50734798(-) A-I      intronic
chr10:50715530(-) A-I      intronic
chr10:50734799(-) A-I      intronic
chr10:50733571(-) A-I      intronic
chr10:50716203(-) A-I      intronic
chr10:50733436(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ERCC6
chr10:50733571(-) A-I intron -    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ERCC6
chr10:50666842-50666843(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr10:50666859-50666860(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr10:50666881-50666882(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr10:50666907-50666908(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr10:50666938-50666939(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr10:50667044-50667045(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr10:50667073-50667074(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr10:50667152-50667153(-) m6A 3'UTR//CDS       24284625//24981863//27773535//27371828//27773536//22575960//22608085
chr10:50667209-50667210(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr10:50668103-50668104(-) m6A exon//intron       27773535
chr10:50668143-50668144(-) m6A exon//intron       27773535
chr10:50678273-50678274(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr10:50678292-50678293(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr10:50678301-50678302(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr10:50678347-50678348(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr10:50678382-50678383(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr10:50678402-50678403(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr10:50678411-50678412(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr10:50678422-50678423(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr10:50678447-50678448(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//22608085
chr10:50678452-50678453(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//22608085
chr10:50678489-50678490(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr10:50678512-50678513(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr10:50678528-50678529(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr10:50678593-50678594(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr10:50678602-50678603(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr10:50678657-50678658(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr10:50678674-50678675(-) m6A 3'UTR//CDS       24981863//27773535//22608085
chr10:50680961-50680962(-) m6A 3'UTR//CDS       27773535//27371828
chr10:50680973-50680974(-) m6A 3'UTR//CDS       27773535//27371828
chr10:50680979-50680980(-) m6A 3'UTR//CDS       27773535//27371828
chr10:50681003-50681004(-) m6A 3'UTR//CDS       -
chr10:50681549-50681550(-) m6A 3'UTR//CDS       -
chr10:50708731-50708732(-) m6A 5'UTR//CDS//exon       27773535
chr10:50710098-50710099(-) m6A 5'UTR//intron       27773535
chr10:50710106-50710107(-) m6A 5'UTR//intron       27773535
chr10:50710114-50710115(-) m6A 5'UTR//intron       27773535
chr10:50710148-50710149(-) m6A 5'UTR//intron       27773535
chr10:50714031-50714032(-) m6A 5'UTR//CDS//exon       24981863//27773535//22608085
chr10:50714039-50714040(-) m6A 5'UTR//CDS//exon       24981863//27773535//22608085
chr10:50714045-50714046(-) m6A 5'UTR//CDS//exon       24284625//25456834//24981863//27773535//22575960//22608085
chr10:50723270-50723271(-) m6A intron       27773535
chr10:50723349-50723350(-) m6A intron       27773535
chr10:50723451-50723452(-) m6A intron       24209618//24981863//27773535//22575960//22608085
chr10:50723489-50723490(-) m6A intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr10:50723546-50723547(-) m6A intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr10:50723564-50723565(-) m6A intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr10:50723584-50723585(-) m6A intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr10:50723636-50723637(-) m6A intron       24284625//25456834//24981863//27773535//22575960//22608085
chr10:50723650-50723651(-) m6A intron       24284625//24981863//27773535//22575960//22608085
chr10:50723684-50723685(-) m6A intron       24284625//24981863//27773535//22575960//22608085
chr10:50723754-50723755(-) m6A intron       24284625//24981863//27773535//22575960//22608085
chr10:50723769-50723770(-) m6A intron       24284625//24981863//27773535//22575960//22608085
chr10:50723808-50723809(-) m6A intron       24284625//24981863//27773535//22575960//22608085
chr10:50723840-50723841(-) m6A intron       24284625//24981863//27773535//22575960//22608085
chr10:50724056-50724057(-) m6A intron       24284625//24981863//27773535//22608085
chr10:50724125-50724126(-) m6A intron       24284625//24981863//22608085
chr10:50724197-50724198(-) m6A intron       24284625//24981863
chr10:50724210-50724211(-) m6A intron       24284625
chr10:50724311-50724312(-) m6A intron       27773535
chr10:50724367-50724368(-) m6A intron       24981863//27773535
chr10:50724404-50724405(-) m6A intron       24981863//27773535//22608085
chr10:50724438-50724439(-) m6A intron       24981863//27773535//22575960//22608085
chr10:50724490-50724491(-) m6A intron       24981863//27773535//22575960//22608085
chr10:50724544-50724545(-) m6A intron       24284625//24981863//27773535//22575960//22608085
chr10:50724551-50724552(-) m6A intron       24284625//24981863//27773535//22575960//22608085
chr10:50724692-50724693(-) m6A intron       24284625//24209618//24981863//27773535//22608085
chr10:50724719-50724720(-) m6A intron       24284625//24209618//24981863//27773535//22608085
chr10:50724739-50724740(-) m6A intron       24284625//24209618//24981863//27773535//22608085
chr10:50725015-50725016(-) m6A intron       24284625//27773535
chr10:50725114-50725115(-) m6A intron       27773535
chr10:50725150-50725151(-) m6A intron       24284625//24981863//27773535//22608085
chr10:50732177-50732178(-) m1A CDS       26863196
chr10:50732294-50732295(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr10:50732378-50732379(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr10:50732402-50732403(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr10:50732416-50732417(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr10:50732473-50732474(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr10:50732531-50732532(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr10:50732536-50732537(-) m6A CDS       -
chr10:50732540-50732541(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr10:50732635-50732636(-) m6A CDS       24284625//24981863//27773535//22608085
chr10:50732710-50732711(-) m6A CDS       24284625//24981863//27773535
chr10:50732775-50732776(-) m6A CDS       24284625
chr10:50736541-50736542(-) m6A CDS//exon       27773535
chr10:50736568-50736569(-) m6A CDS//exon       27773535
chr10:50738798-50738799(-) m6A CDS       27773535
chr10:50738811-50738812(-) m6A CDS       27773535
chr10:50738843-50738844(-) m6A CDS       27773535
chr10:50740976-50740977(-) m6A CDS       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BART11-5p
Exosome B cell line (Raji)     21505438
ERCC6
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART11-5p
Interactor2: ERCC6

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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