Basic Information:

  VIRBase ID:  

VHID00332329

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-3p:  MIMAT0003420          MOCS3:  NM_014484     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART10-3p	MOCS3
miRBase Accession/Entrez ID	MIMAT0003420	27304
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	UBA4

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MOCS3	chr20:49575489-49575490(+) m6A CDS       24981863//22608085 chr20:49575606-49575607(+) m6A CDS       24284625//24981863//22608085 chr20:49575622-49575623(+) m6A CDS       24284625//24981863//22608085 chr20:49575716-49575717(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr20:49575881-49575882(+) m6A CDS       24284625//24981863//22575960//22608085 chr20:49575920-49575921(+) m6A CDS       24284625//24981863//22575960//22608085 chr20:49576081-49576082(+) m6A CDS       24284625//24981863//22608085 chr20:49576310-49576311(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:49576466-49576467(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:49576506-49576507(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:49576539-49576540(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:49576617-49576618(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:49576682-49576683(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:49576744-49576745(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:49576885-49576886(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22575960//22608085 chr20:49576963-49576964(+) m6A 3'UTR       24209618//24981863//26404942//22575960//22608085 chr20:49577002-49577003(+) m6A 3'UTR       24209618//24981863//26404942//22575960//22608085 chr20:49577040-49577041(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MOCS3	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART10-3p
Interactor2: MOCS3

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	cRep//miRanda//PARalyzer//Targetscan
Support Database	RepTar//ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	RepTar//ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	Downregulation
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.