Detail Information

Basic Information:


  VIRBase ID:  

VHID00331922

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-3p:           SEMA3A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART10-3p SEMA3A
miRBase
Accession/Entrez ID		 MIMAT0003420 10371
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - coll-1//COLL1//HH16//Hsema-I//Hsema-III//SEMA1//SEMAD//SEMAIII//SEMAL//SemD

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SEMA3A
chr7:83596854(-) A-I      intronic
chr7:83598232(-) A-I      intronic
chr7:83595135(-) A-I      intronic
chr7:83595145(-) A-I      intronic
chr7:83596100(-) A-I      intronic
chr7:83596235(-) A-I      intronic
chr7:83596836(-) A-I      intronic
chr7:83607413(-) A-I      intronic
chr7:83596922(-) A-I      intronic
chr7:83596926(-) A-I      intronic
chr7:83596988(-) A-I      intronic
chr7:83597032(-) A-I      intronic
chr7:83597045(-) A-I      intronic
chr7:83598174(-) A-I      intronic
chr7:83598179(-) A-I      intronic
chr7:83607356(-) A-I      intronic
chr7:83607353(-) A-I      intronic
chr7:83649588(-) A-I      intronic
chr7:83660433(-) A-I      intronic
chr7:83600648(-) A-I      intronic
chr7:83600639(-) A-I      intronic
chr7:83600636(-) A-I      intronic
chr7:83598291(-) A-I      intronic
chr7:83596891(-) A-I      intronic
chr7:83608644(-) A-I      intronic
chr7:83608677(-) A-I      intronic
chr7:83660437(-) A-I      intronic
chr7:83660579(-) A-I      intronic
chr7:83598399(-) A-I      intronic
chr7:83607217(-) A-I      intronic
chr7:83598394(-) A-I      intronic
chr7:83598391(-) A-I      intronic
chr7:83598341(-) A-I      intronic
chr7:83598275(-) A-I      intronic
chr7:83598305(-) A-I      intronic
chr7:83608643(-) A-I      intronic
chr7:83598328(-) A-I      intronic
chr7:83598323(-) A-I      intronic
chr7:83801943(-) A-I      intronic
chr7:83598320(-) A-I      intronic
chr7:83625743(-) A-I      intronic
chr7:83649424(-) A-I      intronic
chr7:83649579(-) A-I      intronic
chr7:83795038(-) A-I      intronic
chr7:83794367(-) A-I      intronic
chr7:83790423(-) A-I      intronic
chr7:83596234(-) A-I      intronic
chr7:83598255(-) A-I      intronic
chr7:83738121(-) A-I      intronic
chr7:83660588(-) A-I      intronic
chr7:83598248(-) A-I      intronic
chr7:83795051(-) A-I      intronic
chr7:83595166(-) A-I      intronic
chr7:83600721(-) A-I      intronic
chr7:83600549(-) A-I      intronic
chr7:83598224(-) A-I      intronic
chr7:83600661(-) A-I      intronic
chr7:83607258(-) A-I      intronic
chr7:83597008(-) A-I      intronic
chr7:83802015(-) A-I      intronic
chr7:83596826(-) A-I      intronic
chr7:83649564(-) A-I      intronic
chr7:83600524(-) A-I      intronic
chr7:83598223(-) A-I      intronic
chr7:83598373(-) A-I      intronic
chr7:83597040(-) A-I      intronic
chr7:83649616(-) A-I      intronic
chr7:83595274(-) A-I      intronic
chr7:83790157(-) A-I      intronic
chr7:83663440(-) A-I      intronic
chr7:83609709(-) A-I      intronic
chr7:83596125(-) A-I      intronic
chr7:83663428(-) A-I      intronic
chr7:83787639(-) A-I      intronic
chr7:83649580(-) A-I      intronic
chr7:83608676(-) A-I      intronic
chr7:83596879(-) A-I      intronic
chr7:83738073(-) A-I      intronic
chr7:83809892(-) A-I      intronic
chr7:83649499(-) A-I      intronic
chr7:83598330(-) A-I      intronic
chr7:83649554(-) A-I      intronic
chr7:83787609(-) A-I      intronic
chr7:83600575(-) A-I      intronic
chr7:83649562(-) A-I      intronic
chr7:83598340(-) A-I      intronic
chr7:83598400(-) A-I      intronic
chr7:83596943(-) A-I      intronic
chr7:83607300(-) A-I      intronic
chr7:83608546(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SEMA3A
chr7:83585680-83585681(-) m6A 3'UTR       24981863//27773535
chr7:83585727-83585728(-) m6A 3'UTR       27773535
chr7:83585747-83585748(-) m6A 3'UTR       27773535
chr7:83586043-83586044(-) m6A 3'UTR       24981863
chr7:83586052-83586053(-) m6A 3'UTR       24981863
chr7:83586064-83586065(-) m6A 3'UTR       24981863
chr7:83586137-83586138(-) m6A 3'UTR       24981863//27773535
chr7:83586302-83586303(-) m6A 3'UTR       24981863
chr7:83586785-83586786(-) m6A 3'UTR       24981863
chr7:83586790-83586791(-) m6A 3'UTR       24981863
chr7:83586795-83586796(-) m6A 3'UTR       24981863
chr7:83586830-83586831(-) m6A 3'UTR       24981863
chr7:83586851-83586852(-) m6A 3'UTR       24981863
chr7:83586881-83586882(-) m6A 3'UTR       24981863
chr7:83588122-83588123(-) m6A 3'UTR       27773535
chr7:83588689-83588690(-) m6A 3'UTR       24981863
chr7:83588734-83588735(-) m6A 3'UTR       24981863
chr7:83589051-83589052(-) m6A 3'UTR       24981863
chr7:83589095-83589096(-) m6A 3'UTR       24981863
chr7:83589146-83589147(-) m6A 3'UTR       24981863
chr7:83589221-83589222(-) m6A 3'UTR       24981863
chr7:83589272-83589273(-) m6A 3'UTR       24981863
chr7:83589618-83589619(-) m6A 3'UTR       24981863
chr7:83589672-83589673(-) m6A 3'UTR       24981863
chr7:83589698-83589699(-) m6A 3'UTR       24981863
chr7:83589703-83589704(-) m6A 3'UTR       24981863
chr7:83590045-83590046(-) m6A 3'UTR       27773535
chr7:83590140-83590141(-) m6A 3'UTR       24981863//27773535//22608085
chr7:83590299-83590300(-) m6A 3'UTR       24981863//27773535//22608085
chr7:83590317-83590318(-) m6A 3'UTR       24981863//27773535//22608085
chr7:83590344-83590345(-) m6A 3'UTR       24981863//26404942//27773535//22608085
chr7:83590444-83590445(-) m6A 3'UTR       24981863//26404942//27773535//22608085
chr7:83590476-83590477(-) m6A 3'UTR       24981863//26404942//27773535//22608085
chr7:83590606-83590607(-) m6A 3'UTR       24209618//25456834//24981863//26404942//27773535//22608085
chr7:83590625-83590626(-) m6A 3'UTR       24209618//25456834//24981863//26404942//27773535//22608085
chr7:83590640-83590641(-) m6A 3'UTR       24209618//25456834//24981863//26404942//27773535//22608085
chr7:83590650-83590651(-) m6A 3'UTR       24209618//25456834//24981863//26404942//27773535//22608085
chr7:83590660-83590661(-) m6A 3'UTR       24209618//25456834//24981863//27773535//22608085
chr7:83590667-83590668(-) m6A 3'UTR       24209618//25456834//24981863//27773535//22608085
chr7:83590721-83590722(-) m6A CDS       24209618//25456834//24981863//27773535//22608085
chr7:83590729-83590730(-) m6A CDS       24209618//25456834//24981863//27773535//22608085
chr7:83590774-83590775(-) m6A CDS       24209618//25456834//24981863//27773535//22608085
chr7:83590788-83590789(-) m6A CDS       24209618//25456834//24981863//27773535//22608085
chr7:83590809-83590810(-) m6A CDS       24209618//25456834//24981863//27773535//22608085
chr7:83590816-83590817(-) m6A CDS       24209618//25456834//24981863//27773535//22608085
chr7:83590833-83590834(-) m6A CDS       24209618//25456834//24981863//27773535//22608085
chr7:83590888-83590889(-) m6A CDS       24209618//25456834//24981863//27773535//22608085
chr7:83590940-83590941(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085
chr7:83590977-83590978(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085
chr7:83591027-83591028(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085
chr7:83591043-83591044(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085
chr7:83591114-83591115(-) m6A CDS       24981863//27773535
chr7:83606458-83606459(-) m6A CDS       27773535
chr7:83606479-83606480(-) m6A CDS       27773535
chr7:83610693-83610694(-) m6A CDS       27773535
chr7:83631353-83631354(-) m6A CDS       26404942
chr7:83634657-83634658(-) m6A CDS       26404942
chr7:83634682-83634683(-) m6A CDS       26404942
chr7:83634704-83634705(-) m6A CDS       26404942
chr7:83634764-83634765(-) m6A CDS       26404942
chr7:83739859-83739860(-) m6A CDS       27773535
chr7:83758445-83758446(-) m6A CDS       27773535
chr7:83823822-83823823(-) m6A CDS       24981863//27773535
chr7:83823840-83823841(-) m6A CDS       24981863//27773535
chr7:83823919-83823920(-) m6A 5'UTR       24209618//25456834//24981863//27773535//22608085
chr7:83823936-83823937(-) m6A 5'UTR       24209618//25456834//24981863//26404942//27773535//22608085
chr7:83823967-83823968(-) m6A 5'UTR       24209618//25456834//24981863//26404942//27773535//22608085
chr7:83824011-83824012(-) m6A 5'UTR//intron       24209618//25456834//24981863//26404942//27773535//22608085
chr7:83824199-83824200(-) m6A 5'UTR//intron       24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SEMA3A
Cytosol HCC cell line (HepG2)     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART10-3p
Interactor2: SEMA3A

Evidence Support:


Prediction-Evidence cRep//miRanda//Targetscan
Support Database RepTar//VmiReg

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