Basic Information:

  VIRBase ID:  

VHID00331451

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-3p:  MIMAT0003420          SOX9:  NM_000346     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART10-3p	SOX9
miRBase Accession/Entrez ID	MIMAT0003420	6662
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CMD1//CMPD1//SRA1//SRXX2//SRXY10

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SOX9	chr17:70117184-70117185(+) m6A 5'UTR       24981863 chr17:70117195-70117196(+) m6A 5'UTR       24981863 chr17:70117212-70117213(+) m6A 5'UTR       24981863 chr17:70117235-70117236(+) m6A 5'UTR       24981863 chr17:70117351-70117352(+) m6A 5'UTR       24981863 chr17:70117617-70117618(+) m6A CDS       24284625//24981863 chr17:70117656-70117657(+) m6A CDS       24284625//24981863 chr17:70117665-70117666(+) m6A CDS       24284625//24981863 chr17:70117683-70117684(+) m6A CDS       24284625//24981863 chr17:70117731-70117732(+) m6A CDS       24981863 chr17:70117833-70117834(+) m6A CDS       - chr17:70117905-70117906(+) m6A CDS       24209618 chr17:70118930-70118931(+) m6A CDS       24284625//24209618//24981863 chr17:70119724-70119725(+) m6A CDS       24209618 chr17:70119789-70119790(+) m6A CDS       - chr17:70120337-70120338(+) m6A CDS       24284625//24209618//24981863 chr17:70120406-70120407(+) m6A CDS       24284625//24209618//24981863//22608085 chr17:70120471-70120472(+) m6A CDS       24284625//24209618//24981863//22608085 chr17:70120494-70120495(+) m6A CDS       24284625//24209618//24981863//22608085 chr17:70120592-70120593(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr17:70120613-70120614(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr17:70120677-70120678(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr17:70120716-70120717(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr17:70120722-70120723(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr17:70120810-70120811(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr17:70120815-70120816(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr17:70120824-70120825(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr17:70120898-70120899(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SOX9	Exosome Blood     - Membrane HCC cell line (HepG2)     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART10-3p
Interactor2: SOX9

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg