Basic Information:

  VIRBase ID:  

VHID00331290

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-3p:  MIMAT0003420          POLR2H:  NM_001389586     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART10-3p	POLR2H
miRBase Accession/Entrez ID	MIMAT0003420	5437
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	RPABC3//RPB17//RPB8

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	POLR2H	chr3:184081724(+) A-I      intronic chr3:184081751(+) A-I      intronic chr3:184082092(+) A-I      intronic chr3:184082098(+) A-I      intronic chr3:184082162(+) A-I      intronic chr3:184082169(+) A-I      intronic chr3:184082199(+) A-I      intronic chr3:184082213(+) A-I      intronic chr3:184082237(+) A-I      intronic chr3:184084255(+) A-I      intronic chr3:184083272(+) A-I      intronic chr3:184082122(+) A-I      intronic chr3:184082097(+) A-I      intronic chr3:184082061(+) A-I      intronic chr3:184081680(+) A-I      intronic chr3:184081677(+) A-I      intronic chr3:184081760(+) A-I      intronic chr3:184082143(+) A-I      intronic chr3:184084267(+) A-I      intronic chr3:184084308(+) A-I      intronic chr3:184084388(+) A-I      intronic chr3:184081679(+) A-I      intronic chr3:184081674(+) A-I      intronic chr3:184081652(+) A-I      intronic chr3:184081678(+) A-I      intronic chr3:184081719(+) A-I      intronic chr3:184084325(+) A-I      intronic chr3:184081681(+) A-I      intronic chr3:184081741(+) A-I      intronic chr3:184083284(+) A-I      intronic chr3:184082146(+) A-I      intronic chr3:184082134(+) A-I      intronic chr3:184081662(+) A-I      intronic chr3:184082079(+) A-I      intronic chr3:184083187(+) A-I      intronic chr3:184083286(+) A-I      intronic chr3:184083267(+) A-I      intronic chr3:184083263(+) A-I      intronic chr3:184081780(+) A-I      intronic chr3:184084365(+) A-I      intronic chr3:184083355(+) A-I      intronic chr3:184082095(+) A-I      intronic chr3:184082196(+) A-I      intronic chr3:184082190(+) A-I      intronic chr3:184083248(+) A-I      intronic chr3:184081663(+) A-I      intronic chr3:184082118(+) A-I      intronic chr3:184081683(+) A-I      intronic chr3:184083379(+) A-I      intronic chr3:184082117(+) A-I      intronic chr3:184082205(+) A-I      intronic chr3:184082135(+) A-I      intronic chr3:184081740(+) A-I      intronic chr3:184084243(+) A-I      intronic chr3:184083194(+) A-I      intronic chr3:184083447(+) A-I      intronic chr3:184082037(+) A-I      intronic chr3:184083193(+) A-I      intronic chr3:184081789(+) A-I      intronic chr3:184084400(+) A-I      intronic chr3:184083774(+) A-I      intronic chr3:184084206(+) A-I      intronic chr3:184083780(+) A-I      intronic chr3:184083247(+) A-I      intronic chr3:184083220(+) A-I      intronic chr3:184081718(+) A-I      intronic chr3:184083199(+) A-I      intronic chr3:184083288(+) A-I      intronic chr3:184082087(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	POLR2H	chr3:184082087(+) A-G intron -    22484847 chr3:184082118(+) A-G intron -    22484847 chr3:184082134(+) A-G intron -    22484847 chr3:184082135(+) A-G intron -    22484847 chr3:184082156(+) A-G intron -    22484847 chr3:184082190(+) A-G intron -    22484847 chr3:184082196(+) A-G intron -    22484847 chr3:184082205(+) A-G intron -    22484847 chr3:184083199(+) A-G intron -    22484847 chr3:184083247(+) A-G intron -    22484847 chr3:184083248(+) A-G intron -    22484847 chr3:184083338(+) A-G intron -    22484847 chr3:184084243(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	POLR2H	chr3:184079756-184079757(+) m6A 5'UTR       24981863 chr3:184080422-184080423(+) m6A 5'UTR//intron       - chr3:184080682-184080683(+) m6A 5'UTR//exon//intron       24981863 chr3:184080814-184080815(+) m6A 5'UTR//exon//intron       25456834//24981863//27371828//22608085 chr3:184080838-184080839(+) m6A 5'UTR//exon//intron       25456834//24981863//27371828//22608085 chr3:184080928-184080929(+) m6A 5'UTR//exon//intron       24284625//25456834//24981863 chr3:184080975-184080976(+) m6A 5'UTR//exon//intron       24284625//25456834//24981863 chr3:184081023-184081024(+) m6A 5'UTR//exon//intron       24284625//24981863 chr3:184081030-184081031(+) m6A 5'UTR//exon//intron       24284625//24981863 chr3:184083163-184083164(+) m6A exon//intron       - chr3:184084562-184084563(+) m6A CDS//exon//intron       - chr3:184086082-184086083(+) m6A 3'UTR//CDS//exon       22575960 chr3:184086233-184086234(+) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr3:184086252-184086253(+) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr3:184086310-184086311(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr3:184086325-184086326(+) m6A 3'UTR//exon       24284625//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	POLR2H	Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART10-3p
Interactor2: POLR2H

Evidence Support:

Prediction-Evidence	cRep//Targetscan
Support Database	RepTar//VmiReg