Basic Information:

  VIRBase ID:  

VHID00331146

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-3p:  MIMAT0003420          CAPRIN1:  NM_005898     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART10-3p	CAPRIN1
miRBase Accession/Entrez ID	MIMAT0003420	4076
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GPIAP1//GPIP137//GRIP137//M11S1//p137GPI//RNG105

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CAPRIN1	chr11:34105263(+) A-I      intronic chr11:34116285(+) A-I      intronic chr11:34116200(+) A-I      intronic chr11:34082236(+) A-I      intronic chr11:34100855(+) A-I      intronic chr11:34098423(+) A-I      intronic chr11:34098408(+) A-I      intronic chr11:34098407(+) A-I      intronic chr11:34079366(+) A-I      intronic chr11:34082216(+) A-I      intronic chr11:34092951(+) A-I      intronic chr11:34092915(+) A-I      intronic chr11:34092896(+) A-I      intronic chr11:34092882(+) A-I      intronic chr11:34082268(+) A-I      intronic chr11:34083621(+) A-I      intronic chr11:34082261(+) A-I      intronic chr11:34082254(+) A-I      intronic chr11:34105730(+) A-I      intronic chr11:34114571(+) A-I      intronic chr11:34098301(+) A-I      intronic chr11:34116555(+) A-I      intronic chr11:34109588(+) A-I      intronic chr11:34096248(+) A-I      intronic chr11:34116293(+) A-I      intronic chr11:34116159(+) A-I      intronic chr11:34109667(+) A-I      intronic chr11:34110640(+) A-I      intronic chr11:34092059(+) A-I      intronic chr11:34100892(+) A-I      intronic chr11:34098456(+) A-I      intronic chr11:34100791(+) A-I      intronic chr11:34082834(+) A-I      intronic chr11:34109582(+) A-I      intronic chr11:34082004(+) A-I      intronic chr11:34114696(+) A-I      intronic chr11:34093026(+) A-I      intronic chr11:34109718(+) A-I      intronic chr11:34082817(+) A-I      intronic chr11:34082854(+) A-I      intronic chr11:34116103(+) A-I      intronic chr11:34116194(+) A-I      intronic chr11:34109749(+) A-I      intronic chr11:34096229(+) A-I      intronic chr11:34110651(+) A-I      intronic chr11:34081523(+) A-I      intronic chr11:34110654(+) A-I      intronic chr11:34083016(+) A-I      intronic chr11:34100935(+) A-I      intronic chr11:34092950(+) A-I      intronic chr11:34116269(+) A-I      intronic chr11:34100955(+) A-I      intronic chr11:34116102(+) A-I      intronic chr11:34105386(+) A-I      intronic chr11:34109731(+) A-I      intronic chr11:34100782(+) A-I      intronic chr11:34116342(+) A-I      intronic chr11:34116452(+) A-I      intronic chr11:34092945(+) A-I      intronic chr11:34082895(+) A-I      intronic chr11:34083261(+) A-I      intronic chr11:34092992(+) A-I      intronic chr11:34116246(+) A-I      intronic chr11:34110566(+) A-I      intronic chr11:34116233(+) A-I      intronic chr11:34088687(+) A-I      intronic chr11:34082870(+) A-I      intronic chr11:34081991(+) A-I      intronic chr11:34083474(+) A-I      intronic chr11:34110558(+) A-I      intronic chr11:34092926(+) A-I      intronic chr11:34100888(+) A-I      intronic chr11:34082847(+) A-I      intronic chr11:34116530(+) A-I      intronic chr11:34080981(+) A-I      intronic chr11:34082935(+) A-I      intronic chr11:34092855(+) A-I      intronic chr11:34100795(+) A-I      intronic chr11:34100756(+) A-I      intronic chr11:34098471(+) A-I      intronic chr11:34093100(+) A-I      intronic chr11:34093044(+) A-I      intronic chr11:34098361(+) A-I      intronic chr11:34105341(+) A-I      intronic chr11:34082883(+) A-I      intronic chr11:34082823(+) A-I      intronic chr11:34105686(+) A-I      intronic chr11:34083407(+) A-I      intronic chr11:34116190(+) A-I      intronic chr11:34083243(+) A-I      intronic chr11:34098411(+) A-I      intronic chr11:34092934(+) A-I      intronic chr11:34107174(+) A-I      intronic chr11:34082173(+) A-I      intronic chr11:34100902(+) A-I      intronic chr11:34083467(+) A-I      intronic chr11:34116223(+) A-I      intronic chr11:34116733(+) A-I      intronic chr11:34092957(+) A-I      intronic chr11:34081632(+) A-I      intronic chr11:34082879(+) A-I      intronic chr11:34100771(+) A-I      intronic chr11:34116556(+) A-I      intronic chr11:34081622(+) A-I      intronic chr11:34082871(+) A-I      intronic chr11:34105722(+) A-I      intronic chr11:34110736(+) A-I      intronic chr11:34116454(+) A-I      intronic chr11:34113070(+) A-I      intronic chr11:34083017(+) A-I      intronic chr11:34100768(+) A-I      intronic chr11:34100879(+) A-I      intronic chr11:34081912(+) A-I      intronic chr11:34100789(+) A-I      intronic chr11:34098339(+) A-I      intronic chr11:34110725(+) A-I      intronic chr11:34081675(+) A-I      intronic chr11:34083466(+) A-I      intronic chr11:34092350(+) A-I      intronic chr11:34092081(+) A-I      intronic chr11:34100826(+) A-I      intronic chr11:34083624(+) A-I      intronic chr11:34116240(+) A-I      intronic chr11:34116215(+) A-I      intronic chr11:34113094(+) A-I      intronic chr11:34100827(+) A-I      intronic chr11:34098360(+) A-I      intronic chr11:34116315(+) A-I      intronic chr11:34105412(+) A-I      intronic chr11:34083332(+) A-I      intronic chr11:34098421(+) A-I      intronic chr11:34115284(+) A-I      intronic chr11:34116197(+) A-I      intronic chr11:34083308(+) A-I      intronic chr11:34081945(+) A-I      intronic chr11:34083430(+) A-I      intronic chr11:34082893(+) A-I      intronic chr11:34100797(+) A-I      intronic chr11:34100769(+) A-I      intronic chr11:34109939(+) A-I      intronic chr11:34116094(+) A-I      intronic chr11:34090906(+) A-I      intronic chr11:34092862(+) A-I      intronic chr11:34098357(+) A-I      intronic chr11:34105684(+) A-I      intronic chr11:34116717(+) A-I      intronic chr11:34083918(+) A-I      intronic chr11:34083029(+) A-I      intronic chr11:34100796(+) A-I      intronic chr11:34082286(+) A-I      intronic chr11:34082217(+) A-I      intronic chr11:34083532(+) A-I      intronic chr11:34116188(+) A-I      intronic chr11:34083353(+) A-I      intronic chr11:34081987(+) A-I      intronic chr11:34111072(+) A-I      intronic chr11:34082810(+) A-I      intronic chr11:34092389(+) A-I      intronic chr11:34103864(+) A-I      intronic chr11:34083613(+) A-I      intronic chr11:34082880(+) A-I      intronic chr11:34107191(+) A-I      intronic chr11:34116523(+) A-I      intronic chr11:34098345(+) A-I      intronic chr11:34116507(+) A-I      intronic chr11:34116245(+) A-I      intronic chr11:34109630(+) A-I      intronic chr11:34100761(+) A-I      intronic chr11:34082270(+) A-I      intronic chr11:34116181(+) A-I      intronic chr11:34082283(+) A-I      intronic chr11:34082176(+) A-I      intronic chr11:34082976(+) A-I      intronic chr11:34098427(+) A-I      intronic chr11:34105736(+) A-I      intronic chr11:34100700(+) A-I      intronic chr11:34093018(+) A-I      intronic chr11:34082169(+) A-I      intronic chr11:34116237(+) A-I      intronic chr11:34107253(+) A-I      intronic chr11:34109969(+) A-I      intronic chr11:34083262(+) A-I      intronic chr11:34082220(+) A-I      intronic chr11:34109650(+) A-I      intronic chr11:34095225(+) A-I      intronic chr11:34081596(+) A-I      intronic chr11:34093006(+) A-I      intronic chr11:34083424(+) A-I      intronic chr11:34082807(+) A-I      intronic chr11:34116681(+) A-I      intronic chr11:34115369(+) A-I      intronic chr11:34082938(+) A-I      intronic chr11:34081906(+) A-I      intronic chr11:34092054(+) A-I      intronic chr11:34098355(+) A-I      intronic chr11:34083530(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CAPRIN1	chr11:34098339(+) A-I intron -    22327324 chr11:34098357(+) A-I intron -    22327324 chr11:34100826(+) A-I intron -    22327324 chr11:34100827(+) A-I intron -    22327324 chr11:34100879(+) A-I intron -    22327324 chr11:34100761(+) A-I intron -    21960545 chr11:34100769(+) A-I intron -    21960545 chr11:34100789(+) A-I intron -    21960545 chr11:34100791(+) A-I intron -    21960545 chr11:34100856(+) A-I intron -    21960545 chr11:34105684(+) A-I intron -    21960545 chr11:34115309(+) A-I intron -    21960545 chr11:34093018(+) A-G intron -    22484847 chr11:34098339(+) A-G intron -    22484847 chr11:34098357(+) A-G intron -    22484847 chr11:34098421(+) A-G intron -    22484847 chr11:34100797(+) A-G intron -    22484847 chr11:34100826(+) A-G intron -    22484847 chr11:34100827(+) A-G intron -    22484847 chr11:34100879(+) A-G intron -    22484847 chr11:34100902(+) A-G intron -    22484847 chr11:34116197(+) A-G intron -    22484847 chr11:34116237(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CAPRIN1	chr11:34073305-34073306(+) m6A 5'UTR//exon       24284625//24209618//24981863 chr11:34073356-34073357(+) m6A 5'UTR//exon       24284625//24209618//24981863 chr11:34073635-34073636(+) m6A 5'UTR//intron       24209618//22575960 chr11:34074014-34074015(+) m6A 5'UTR//CDS//exon//intron       24209618//22575960 chr11:34074117-34074118(+) m6A 5'UTR//CDS//exon//intron       24209618//22575960 chr11:34074158-34074159(+) m6A CDS//exon//intron       24209618//22575960 chr11:34074166-34074167(+) m6A CDS//exon//intron       24209618//22575960 chr11:34093303-34093304(+) m6A CDS//exon//intron       26404942 chr11:34097791-34097792(+) m6A CDS//exon//intron       24981863//26404942//27773535//22575960 chr11:34097803-34097804(+) m6A CDS//exon//intron       24981863//26404942//27773535//22575960 chr11:34097841-34097842(+) m6A CDS//exon//intron       24981863//26404942//27773535//22575960 chr11:34097857-34097858(+) m6A CDS//exon//intron       24981863//26404942//27773535//22575960 chr11:34097885-34097886(+) m6A CDS//exon//intron       24981863//26404942//27773535//22575960 chr11:34097911-34097912(+) m6A CDS//exon//intron       24981863//26404942//27773535//22575960 chr11:34097922-34097923(+) m6A CDS//exon//intron       24981863//26404942//27773535//22575960 chr11:34097996-34097997(+) m6A CDS//exon//intron       26404942//27773535//22575960 chr11:34098008-34098009(+) m6A CDS//exon//intron       27773535//22575960 chr11:34098115-34098116(+) m6A CDS//exon//intron       27773535//22575960 chr11:34101216-34101217(+) m6A CDS//intron       22575960 chr11:34101294-34101295(+) m6A CDS//intron       22575960 chr11:34104512-34104513(+) m6A CDS//intron       26404942//22575960 chr11:34104528-34104529(+) m6A CDS//intron       26404942//22575960 chr11:34104570-34104571(+) m6A CDS//intron       26404942//22575960 chr11:34107711-34107712(+) m6A CDS//intron       26404942//22575960 chr11:34107725-34107726(+) m6A CDS//intron       26404942 chr11:34107878-34107879(+) m6A CDS//intron       26404942 chr11:34111817-34111818(+) m6A CDS//exon//intron       26404942 chr11:34112097-34112098(+) m6A CDS//exon//intron       26404942 chr11:34112102-34112103(+) m6A CDS//exon//intron       26404942//27773535 chr11:34112159-34112160(+) m6A CDS//exon//intron       26404942//27773535 chr11:34112167-34112168(+) m6A CDS//exon//intron       26404942//27773535 chr11:34113589-34113590(+) m6A CDS//exon//intron       26404942 chr11:34113599-34113600(+) m6A CDS//exon//intron       26404942 chr11:34117373-34117374(+) m6A exon//intron       26404942 chr11:34118784-34118785(+) m6A CDS//exon       22575960 chr11:34119288-34119289(+) m6A CDS//exon       22575960 chr11:34120947-34120948(+) m6A 3'UTR//exon       27773535 chr11:34121016-34121017(+) m6A 3'UTR//exon       24981863//27773535 chr11:34121031-34121032(+) m6A 3'UTR//exon       24981863//27773535 chr11:34121051-34121052(+) m6A 3'UTR//exon       24981863//27773535 chr11:34121056-34121057(+) m6A 3'UTR//exon       24981863 chr11:34121097-34121098(+) m6A 3'UTR//exon       24981863 chr11:34121185-34121186(+) m6A 3'UTR//exon       24981863 chr11:34121316-34121317(+) m6A 3'UTR//exon       24981863 chr11:34122529-34122530(+) m6A 3'UTR//exon       27773535 chr11:34122534-34122535(+) m6A 3'UTR//exon       27773535 chr11:34122545-34122546(+) m6A 3'UTR//exon       27773535 chr11:34122559-34122560(+) m6A 3'UTR//exon       27773535 chr11:34122612-34122613(+) m6A 3'UTR//exon       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CAPRIN1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Insoluble cytoplasm K562 cells     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART10-3p
Interactor2: CAPRIN1

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg