Detail Information

Basic Information:


  VIRBase ID:  

VHID00330242

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART9-3p:           SASS6:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART9-3p SASS6
miRBase
Accession/Entrez ID		 MIMAT0003419 163786
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - MCPH14//SAS-6//SAS6

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SASS6
chr1:100590165(-) A-I      intronic
chr1:100596162(-) A-I      intronic
chr1:100591148(-) A-I      intronic
chr1:100591126(-) A-I      intronic
chr1:100590120(-) A-I      intronic
chr1:100590146(-) A-I      intronic
chr1:100590992(-) A-I      intronic
chr1:100590104(-) A-I      intronic
chr1:100561032(-) A-I      intronic
chr1:100590141(-) A-I      intronic
chr1:100590139(-) A-I      intronic
chr1:100590131(-) A-I      intronic
chr1:100590095(-) A-I      intronic
chr1:100590060(-) A-I      intronic
chr1:100596204(-) A-I      intronic
chr1:100590126(-) A-I      intronic
chr1:100590112(-) A-I      intronic
chr1:100563372(-) A-I      intronic
chr1:100562546(-) A-I      intronic
chr1:100554049(-) A-I      intronic
chr1:100591103(-) A-I      intronic
chr1:100591078(-) A-I      intronic
chr1:100591072(-) A-I      intronic
chr1:100562611(-) A-I      intronic
chr1:100590216(-) A-I      intronic
chr1:100563122(-) A-I      intronic
chr1:100570169(-) A-I      intronic
chr1:100591111(-) A-I      intronic
chr1:100594569(-) A-I      intronic
chr1:100552397(-) A-I      intronic
chr1:100563303(-) A-I      intronic
chr1:100594612(-) A-I      intronic
chr1:100558306(-) A-I      intronic
chr1:100558312(-) A-I      intronic
chr1:100559255(-) A-I      intronic
chr1:100594573(-) A-I      intronic
chr1:100559305(-) A-I      intronic
chr1:100596859(-) A-I      intronic
chr1:100591201(-) A-I      intronic
chr1:100562585(-) A-I      intronic
chr1:100558304(-) A-I      intronic
chr1:100558184(-) A-I      intronic
chr1:100591107(-) A-I      intronic
chr1:100592286(-) A-I      intronic
chr1:100554025(-) A-I      intronic
chr1:100591113(-) A-I      intronic
chr1:100591007(-) A-I      intronic
chr1:100588269(-) A-I      intronic
chr1:100591069(-) A-I      intronic
chr1:100562608(-) A-I      intronic
chr1:100558332(-) A-I      intronic
chr1:100593717(-) A-I      intronic
chr1:100559199(-) A-I      intronic
chr1:100559231(-) A-I      intronic
chr1:100553979(-) A-I      intronic
chr1:100588288(-) A-I      intronic
chr1:100588402(-) A-I      intronic
chr1:100591183(-) A-I      intronic
chr1:100563136(-) A-I      intronic
chr1:100590052(-) A-I      intronic
chr1:100588291(-) A-I      intronic
chr1:100559223(-) A-I      intronic
chr1:100558296(-) A-I      intronic
chr1:100553985(-) A-I      intronic
chr1:100560939(-) A-I      intronic
chr1:100588233(-) A-I      intronic
chr1:100596145(-) A-I      intronic
chr1:100590210(-) A-I      intronic
chr1:100552103(-) A-I      intronic
chr1:100552679(-) A-I      intronic
chr1:100590105(-) A-I      intronic
chr1:100589972(-) A-I      intronic
chr1:100590116(-) A-I      intronic
chr1:100570091(-) A-I      intronic
chr1:100558208(-) A-I      intronic
chr1:100552175(-) A-I      intronic
chr1:100567990(-) A-I      intronic
chr1:100552711(-) A-I      intronic
chr1:100558403(-) A-I      intronic
chr1:100592145(-) A-I      intronic
chr1:100559249(-) A-I      intronic
chr1:100559114(-) A-I      intronic
chr1:100554028(-) A-I      intronic
chr1:100587956(-) A-I      Syn:Glu->Glu
chr1:100554245(-) A-I      intronic
chr1:100590075(-) A-I      intronic
chr1:100554011(-) A-I      intronic
chr1:100552205(-) A-I      intronic
chr1:100552375(-) A-I      intronic
chr1:100590155(-) A-I      intronic
chr1:100558828(-) A-I      intronic
chr1:100590186(-) A-I      intronic
chr1:100591204(-) A-I      intronic
chr1:100558404(-) A-I      intronic
chr1:100590115(-) A-I      intronic
chr1:100594623(-) A-I      intronic
chr1:100570895(-) A-I      intronic
chr1:100567974(-) A-I      intronic
chr1:100552146(-) A-I      intronic
chr1:100560938(-) A-I      intronic
chr1:100554019(-) A-I      intronic
chr1:100559218(-) A-I      intronic
chr1:100568015(-) A-I      intronic
chr1:100596123(-) A-I      intronic
chr1:100554360(-) A-I      intronic
chr1:100596870(-) A-I      intronic
chr1:100590085(-) A-I      intronic
chr1:100559303(-) A-I      intronic
chr1:100590101(-) A-I      intronic
chr1:100596906(-) A-I      intronic
chr1:100588284(-) A-I      intronic
chr1:100590993(-) A-I      intronic
chr1:100554321(-) A-I      intronic
chr1:100583123(-) A-I      intronic
chr1:100590114(-) A-I      intronic
chr1:100558326(-) A-I      intronic
chr1:100556774(-) A-I      intronic
chr1:100588356(-) A-I      intronic
chr1:100559265(-) A-I      intronic
chr1:100559161(-) A-I      intronic
chr1:100563124(-) A-I      intronic
chr1:100558288(-) A-I      intronic
chr1:100552085(-) A-I      intronic
chr1:100591135(-) A-I      intronic
chr1:100570083(-) A-I      intronic
chr1:100589970(-) A-I      intronic
chr1:100591151(-) A-I      intronic
chr1:100558260(-) A-I      intronic
chr1:100558243(-) A-I      intronic
chr1:100559206(-) A-I      intronic
chr1:100554385(-) A-I      intronic
chr1:100590110(-) A-I      intronic
chr1:100558199(-) A-I      intronic
chr1:100558248(-) A-I      intronic
chr1:100591149(-) A-I      intronic
chr1:100554328(-) A-I      intronic
chr1:100563146(-) A-I      intronic
chr1:100590045(-) A-I      intronic
chr1:100590154(-) A-I      intronic
chr1:100560381(-) A-I      intronic
chr1:100592116(-) A-I      intronic
chr1:100596209(-) A-I      intronic
chr1:100558247(-) A-I      intronic
chr1:100594578(-) A-I      intronic
chr1:100559060(-) A-I      intronic
chr1:100590183(-) A-I      intronic
chr1:100554119(-) A-I      intronic
chr1:100590039(-) A-I      intronic
chr1:100589989(-) A-I      intronic
chr1:100553975(-) A-I      intronic
chr1:100570237(-) A-I      intronic
chr1:100559099(-) A-I      intronic
chr1:100593730(-) A-I      intronic
chr1:100591152(-) A-I      intronic
chr1:100558161(-) A-I      intronic
chr1:100554118(-) A-I      intronic
chr1:100570112(-) A-I      intronic
chr1:100593843(-) A-I      intronic
chr1:100593729(-) A-I      intronic
chr1:100560226(-) A-I      intronic
chr1:100554059(-) A-I      intronic
chr1:100558270(-) A-I      intronic
chr1:100570502(-) A-I      intronic
chr1:100552235(-) A-I      intronic
chr1:100553968(-) A-I      intronic
chr1:100590209(-) A-I      intronic
chr1:100559169(-) A-I      intronic
chr1:100559196(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SASS6
chr1:100558296(-) A-I intron -    22327324
chr1:100552103(-) A-G intron -    22484847
chr1:100554321(-) A-G intron -    22484847
chr1:100554328(-) A-G intron -    22484847
chr1:100554385(-) A-G intron -    22484847
chr1:100556774(-) A-G intron -    22484847
chr1:100558243(-) A-G intron -    22484847
chr1:100558248(-) A-G intron -    22484847
chr1:100558260(-) A-G intron -    22484847
chr1:100558270(-) A-G intron -    22484847
chr1:100558288(-) A-G intron -    22484847
chr1:100558296(-) A-G intron -    22484847
chr1:100558326(-) A-G intron -    22484847
chr1:100559060(-) A-G intron -    22484847
chr1:100559161(-) A-G intron -    22484847
chr1:100559169(-) A-G intron -    22484847
chr1:100559223(-) A-G intron -    22484847
chr1:100559249(-) A-G intron -    22484847
chr1:100559303(-) A-G intron -    22484847
chr1:100570091(-) A-G intron -    22484847
chr1:100570895(-) A-G intron -    22484847
chr1:100583123(-) A-G intron -    22484847
chr1:100590039(-) A-G intron -    22484847
chr1:100590045(-) A-G intron -    22484847
chr1:100590075(-) A-G intron -    22484847
chr1:100590085(-) A-G intron -    22484847
chr1:100590110(-) A-G intron -    22484847
chr1:100590155(-) A-G intron -    22484847
chr1:100590183(-) A-G intron -    22484847
chr1:100590186(-) A-G intron -    22484847
chr1:100590993(-) A-G intron -    22484847
chr1:100591135(-) A-G intron -    22484847
chr1:100591149(-) A-G intron -    22484847
chr1:100591151(-) A-G intron -    22484847
chr1:100591152(-) A-G intron -    22484847
chr1:100591204(-) A-G intron -    22484847
chr1:100592116(-) A-G intron -    22484847
chr1:100592145(-) A-G intron -    22484847
chr1:100593730(-) A-G intron -    22484847
chr1:100594578(-) A-G intron -    22484847
chr1:100594623(-) A-G intron -    22484847
chr1:100596145(-) A-G intron -    22484847
chr1:100596209(-) A-G intron -    22484847
chr1:100596245(-) C-T intron -    22484847
chr1:100596906(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SASS6
chr1:100549651-100549652(-) m6A 3'UTR//exon       27773535
chr1:100549678-100549679(-) m6A 3'UTR//exon       27773535
chr1:100550022-100550023(-) m6A 3'UTR//exon       27773535
chr1:100550032-100550033(-) m6A 3'UTR//exon       27773535
chr1:100550890-100550891(-) m6A CDS//exon       27773535
chr1:100550943-100550944(-) m6A CDS//exon       27773535
chr1:100551108-100551109(-) m6A CDS//exon       27773535
chr1:100551119-100551120(-) m6A CDS//exon       27773535
chr1:100571436-100571437(-) m6A CDS//exon       27773535
chr1:100572492-100572493(-) m6A CDS//exon       24981863//27773535
chr1:100572507-100572508(-) m6A CDS//exon       24981863//27773535//22608085
chr1:100572531-100572532(-) m6A CDS//exon       24981863//27773535//22608085
chr1:100572956-100572957(-) m6A CDS//exon       24981863//27773535//22608085
chr1:100572980-100572981(-) m6A CDS//exon       24981863//27773535//22608085
chr1:100573016-100573017(-) m6A CDS//exon       24981863//27773535//22608085
chr1:100573069-100573070(-) m6A CDS//exon       24981863//27773535
chr1:100573192-100573193(-) m6A CDS//exon       27773535
chr1:100573315-100573316(-) m6A exon//intron       24981863
chr1:100573371-100573372(-) m6A CDS//exon       24981863//27773535
chr1:100573400-100573401(-) m6A CDS//exon       27773535
chr1:100573417-100573418(-) m6A CDS//exon       27773535
chr1:100573437-100573438(-) m6A CDS//exon       27773535
chr1:100573457-100573458(-) m6A CDS//exon       27773535
chr1:100573547-100573548(-) m6A CDS//exon       24981863//27773535
chr1:100575865-100575866(-) m6A CDS//exon       24981863//27773535
chr1:100575877-100575878(-) m6A CDS//exon       24981863//27773535
chr1:100575893-100575894(-) m6A CDS//exon       24981863//27773535
chr1:100575920-100575921(-) m6A CDS//exon       24981863//27773535//22608085
chr1:100575949-100575950(-) m6A CDS//exon       24981863
chr1:100575953-100575954(-) m6A CDS//exon       24981863//27773535//22608085
chr1:100575971-100575972(-) m6A CDS//exon       24981863//27773535//22608085
chr1:100576009-100576010(-) m6A CDS//exon       24981863//27773535//22608085
chr1:100584603-100584604(-) m6A CDS//exon       24981863//27773535//22608085
chr1:100584619-100584620(-) m6A CDS//exon       24981863//27773535//22608085
chr1:100584675-100584676(-) m6A CDS//exon       24981863//27773535
chr1:100585962-100585963(-) m6A CDS//exon       24981863//27773535
chr1:100598440-100598441(-) m6A 5'UTR//exon       24284625//24981863
chr1:100598446-100598447(-) m6A 5'UTR//exon       24284625//24981863
chr1:100598457-100598458(-) m6A 5'UTR//exon       24284625//24981863
chr1:100598463-100598464(-) m6A 5'UTR//exon       24284625//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SASS6
Cytosol K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART9-3p
Interactor2: SASS6

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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