Basic Information:

  VIRBase ID:  

VHID00328896

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART9-3p:  MIMAT0003419          YTHDF2:  NM_001173128     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART9-3p	YTHDF2
miRBase Accession/Entrez ID	MIMAT0003419	51441
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CAHL//HGRG8//NY-REN-2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	YTHDF2	chr1:29081439(+) A-I      intronic chr1:29090097(+) A-I      intronic chr1:29081446(+) A-I      intronic chr1:29090095(+) A-I      intronic chr1:29077525(+) A-I      intronic chr1:29077494(+) A-I      intronic chr1:29090061(+) A-I      intronic chr1:29077487(+) A-I      intronic chr1:29077454(+) A-I      intronic chr1:29077535(+) A-I      intronic chr1:29081231(+) A-I      intronic chr1:29081428(+) A-I      intronic chr1:29081434(+) A-I      intronic chr1:29090068(+) A-I      intronic chr1:29090107(+) A-I      intronic chr1:29087993(+) A-I      intronic chr1:29088063(+) A-I      intronic chr1:29079395(+) A-I      intronic chr1:29079008(+) A-I      intronic chr1:29078998(+) A-I      intronic chr1:29078937(+) A-I      intronic chr1:29078836(+) A-I      intronic chr1:29077695(+) A-I      intronic chr1:29077377(+) A-I      intronic chr1:29077355(+) A-I      intronic chr1:29076712(+) A-I      intronic chr1:29076642(+) A-I      intronic chr1:29076603(+) A-I      intronic chr1:29076596(+) A-I      intronic chr1:29076559(+) A-I      intronic chr1:29074096(+) A-I      intronic chr1:29074091(+) A-I      intronic chr1:29074083(+) A-I      intronic chr1:29077570(+) A-I      intronic chr1:29077555(+) A-I      intronic chr1:29077550(+) A-I      intronic chr1:29074025(+) A-I      intronic chr1:29073926(+) A-I      intronic chr1:29073924(+) A-I      intronic chr1:29087038(+) A-I      intronic chr1:29073921(+) A-I      intronic chr1:29073859(+) A-I      intronic chr1:29073807(+) A-I      intronic chr1:29073559(+) A-I      intronic chr1:29073473(+) A-I      intronic chr1:29073125(+) A-I      intronic chr1:29072476(+) A-I      intronic chr1:29072453(+) A-I      intronic chr1:29072356(+) A-I      intronic chr1:29072157(+) A-I      intronic chr1:29072013(+) A-I      intronic chr1:29091802(+) A-I      intronic chr1:29071438(+) A-I      intronic chr1:29092640(+) A-I      intronic chr1:29094659(+) A-I      intronic chr1:29088102(+) A-I      intronic chr1:29088134(+) A-I      intronic chr1:29088142(+) A-I      intronic chr1:29094567(+) A-I      intronic chr1:29094527(+) A-I      intronic chr1:29088064(+) A-I      intronic chr1:29092665(+) A-I      intronic chr1:29071330(+) A-I      intronic chr1:29081241(+) A-I      intronic chr1:29071281(+) A-I      intronic chr1:29092108(+) A-I      intronic chr1:29091986(+) A-I      intronic chr1:29091749(+) A-I      intronic chr1:29088178(+) A-I      intronic chr1:29088219(+) A-I      intronic chr1:29087017(+) A-I      intronic chr1:29081243(+) A-I      intronic chr1:29080996(+) A-I      intronic chr1:29080806(+) A-I      intronic chr1:29080481(+) A-I      intronic chr1:29080439(+) A-I      intronic chr1:29080275(+) A-I      intronic chr1:29080262(+) A-I      intronic chr1:29080245(+) A-I      intronic chr1:29080020(+) A-I      intronic chr1:29080009(+) A-I      intronic chr1:29091788(+) A-I      intronic chr1:29079993(+) A-I      intronic chr1:29079853(+) A-I      intronic chr1:29079852(+) A-I      intronic chr1:29079487(+) A-I      intronic chr1:29079482(+) A-I      intronic chr1:29079408(+) A-I      intronic chr1:29074536(+) A-I      intronic chr1:29094294(+) A-I      intronic chr1:29074421(+) A-I      intronic chr1:29079005(+) A-I      intronic chr1:29081133(+) A-I      intronic chr1:29080785(+) A-I      intronic chr1:29074420(+) A-I      intronic chr1:29074426(+) A-I      intronic chr1:29074581(+) A-I      intronic chr1:29074552(+) A-I      intronic chr1:29074476(+) A-I      intronic chr1:29074561(+) A-I      intronic chr1:29074590(+) A-I      intronic chr1:29074565(+) A-I      intronic chr1:29080776(+) A-I      intronic chr1:29065613(+) A-I      intronic chr1:29078973(+) A-I      intronic chr1:29094592(+) A-I      intronic chr1:29074435(+) A-I      intronic chr1:29077403(+) A-I      intronic chr1:29094160(+) A-I      intronic chr1:29075858(+) A-I      intronic chr1:29080495(+) A-I      intronic chr1:29072396(+) A-I      intronic chr1:29087994(+) A-I      intronic chr1:29081030(+) A-I      intronic chr1:29087885(+) A-I      intronic chr1:29088227(+) A-I      intronic chr1:29075821(+) A-I      intronic chr1:29093470(+) A-I      intronic chr1:29092153(+) A-I      intronic chr1:29086389(+) A-I      intronic chr1:29080854(+) A-I      intronic chr1:29079777(+) A-I      intronic chr1:29079953(+) A-I      intronic chr1:29074519(+) A-I      intronic chr1:29077450(+) A-I      intronic chr1:29077449(+) A-I      intronic chr1:29087270(+) A-I      intronic chr1:29093589(+) A-I      intronic chr1:29080921(+) A-I      intronic chr1:29072048(+) A-I      intronic chr1:29079373(+) A-I      intronic chr1:29094227(+) A-I      intronic chr1:29071416(+) A-I      intronic chr1:29076692(+) A-I      intronic chr1:29087186(+) A-I      intronic chr1:29072158(+) A-I      intronic chr1:29072108(+) A-I      intronic chr1:29081209(+) A-I      intronic chr1:29080358(+) A-I      intronic chr1:29092024(+) A-I      intronic chr1:29087773(+) A-I      intronic chr1:29078884(+) A-I      intronic chr1:29077498(+) A-I      intronic chr1:29080931(+) A-I      intronic chr1:29077341(+) A-I      intronic chr1:29080360(+) A-I      intronic chr1:29072296(+) A-I      intronic chr1:29078988(+) A-I      intronic chr1:29078830(+) A-I      intronic chr1:29074190(+) A-I      intronic chr1:29091777(+) A-I      intronic chr1:29076775(+) A-I      intronic chr1:29088043(+) A-I      intronic chr1:29086348(+) A-I      intronic chr1:29071451(+) A-I      intronic chr1:29079411(+) A-I      intronic chr1:29073002(+) A-I      intronic chr1:29074027(+) A-I      intronic chr1:29080428(+) A-I      intronic chr1:29087999(+) A-I      intronic chr1:29065672(+) A-I      intronic chr1:29077690(+) A-I      intronic chr1:29086357(+) A-I      intronic chr1:29076763(+) A-I      intronic chr1:29079939(+) A-I      intronic chr1:29078944(+) A-I      intronic chr1:29080935(+) A-I      intronic chr1:29091588(+) A-I      intronic chr1:29086347(+) A-I      intronic chr1:29073474(+) A-I      intronic chr1:29093445(+) A-I      intronic chr1:29071320(+) A-I      intronic chr1:29087717(+) A-I      intronic chr1:29087716(+) A-I      intronic chr1:29072106(+) A-I      intronic chr1:29080096(+) A-I      intronic chr1:29093422(+) A-I      intronic chr1:29072143(+) A-I      intronic chr1:29079499(+) A-I      intronic chr1:29080833(+) A-I      intronic chr1:29065891(+) A-I      intronic chr1:29087121(+) A-I      intronic chr1:29078842(+) A-I      intronic chr1:29073920(+) A-I      intronic chr1:29079442(+) A-I      intronic chr1:29088128(+) A-I      intronic chr1:29077462(+) A-I      intronic chr1:29074192(+) A-I      intronic chr1:29080319(+) A-I      intronic chr1:29071439(+) A-I      intronic chr1:29092864(+) A-I      intronic chr1:29086213(+) A-I      intronic chr1:29072483(+) A-I      intronic chr1:29091640(+) A-I      intronic chr1:29080844(+) A-I      intronic chr1:29075808(+) A-I      intronic chr1:29075954(+) A-I      intronic chr1:29077349(+) A-I      intronic chr1:29092084(+) A-I      intronic chr1:29073013(+) A-I      intronic chr1:29078925(+) A-I      intronic chr1:29092038(+) A-I      intronic chr1:29079300(+) A-I      intronic chr1:29092007(+) A-I      intronic chr1:29080493(+) A-I      intronic chr1:29080416(+) A-I      intronic chr1:29081244(+) A-I      intronic chr1:29077406(+) A-I      intronic chr1:29079045(+) A-I      intronic chr1:29077350(+) A-I      intronic chr1:29092090(+) A-I      intronic chr1:29076644(+) A-I      intronic chr1:29094593(+) A-I      intronic chr1:29078949(+) A-I      intronic chr1:29080825(+) A-I      intronic chr1:29077485(+) A-I      intronic chr1:29073042(+) A-I      intronic chr1:29080393(+) A-I      intronic chr1:29079917(+) A-I      intronic chr1:29091577(+) A-I      intronic chr1:29081080(+) A-I      intronic chr1:29079010(+) A-I      intronic chr1:29077404(+) A-I      intronic chr1:29072116(+) A-I      intronic chr1:29079806(+) A-I      intronic chr1:29087013(+) A-I      intronic chr1:29089504(+) A-I      intronic chr1:29080283(+) A-I      intronic chr1:29071267(+) A-I      intronic chr1:29079299(+) A-I      intronic chr1:29086900(+) A-I      intronic chr1:29080830(+) A-I      intronic chr1:29084682(+) A-I      intronic chr1:29071982(+) A-I      intronic chr1:29093457(+) A-I      intronic chr1:29079492(+) A-I      intronic chr1:29080784(+) A-I      intronic chr1:29080895(+) A-I      intronic chr1:29087194(+) A-I      intronic chr1:29088129(+) A-I      intronic chr1:29094460(+) A-I      intronic chr1:29080853(+) A-I      intronic chr1:29087074(+) A-I      intronic chr1:29079962(+) A-I      intronic chr1:29065703(+) A-I      intronic chr1:29094571(+) A-I      intronic chr1:29079306(+) A-I      intronic chr1:29072169(+) A-I      intronic chr1:29087918(+) A-I      intronic chr1:29074020(+) A-I      intronic chr1:29081237(+) A-I      intronic chr1:29087840(+) A-I      intronic chr1:29087266(+) A-I      intronic chr1:29077458(+) A-I      intronic chr1:29089841(+) A-I      intronic chr1:29094387(+) A-I      intronic chr1:29081081(+) A-I      intronic chr1:29078994(+) A-I      intronic chr1:29081132(+) A-I      intronic chr1:29081024(+) A-I      intronic chr1:29077337(+) A-I      intronic chr1:29087772(+) A-I      intronic chr1:29078832(+) A-I      intronic chr1:29074137(+) A-I      intronic chr1:29077484(+) A-I      intronic chr1:29071255(+) A-I      intronic chr1:29078991(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	YTHDF2	chr1:29078830(+) A-I intron -    15342557 chr1:29078842(+) A-I intron -    15342557 chr1:29078884(+) A-I intron -    15342557 chr1:29078885(+) A-I intron -    15342557 chr1:29078925(+) A-I intron -    15342557 chr1:29078949(+) A-I intron -    15342557 chr1:29078988(+) A-I intron -    15342557 chr1:29078994(+) A-I intron -    15342557 chr1:29079005(+) A-I intron -    15342557 chr1:29079010(+) A-I intron -    15342557 chr1:29079299(+) A-I intron -    15342557 chr1:29074420(+) A-I intron -    22028664 chr1:29074421(+) A-I intron -    22028664 chr1:29074426(+) A-I intron -    22028664 chr1:29074435(+) A-I intron -    22028664 chr1:29074437(+) A-I intron -    22028664 chr1:29074476(+) A-I intron -    22028664 chr1:29074536(+) A-I intron -    22028664 chr1:29074552(+) A-I intron -    22028664 chr1:29074561(+) A-I intron -    22028664 chr1:29074565(+) A-I intron -    22028664 chr1:29074581(+) A-I intron -    22028664 chr1:29074590(+) A-I intron -    22028664 chr1:29065147(+) C-T intron -    22484847 chr1:29068573(+) C-T intron -    22484847 chr1:29071439(+) A-G intron -    22484847 chr1:29071982(+) A-G intron -    22484847 chr1:29074137(+) A-G intron -    22484847 chr1:29076763(+) A-G intron -    22484847 chr1:29077498(+) A-G intron -    22484847 chr1:29079010(+) A-G intron -    22484847 chr1:29079373(+) A-G intron -    22484847 chr1:29079411(+) A-G intron -    22484847 chr1:29079442(+) A-G intron -    22484847 chr1:29080393(+) A-G intron -    22484847 chr1:29080416(+) A-G intron -    22484847 chr1:29080854(+) A-G intron -    22484847 chr1:29080895(+) A-G intron -    22484847 chr1:29080921(+) A-G intron -    22484847 chr1:29080935(+) A-G intron -    22484847 chr1:29086213(+) A-G intron -    22484847 chr1:29086348(+) A-G intron -    22484847 chr1:29086389(+) A-G intron -    22484847 chr1:29087137(+) T-G intron -    22484847 chr1:29087716(+) A-G intron -    22484847 chr1:29087717(+) A-G intron -    22484847 chr1:29087772(+) A-G intron -    22484847 chr1:29087885(+) A-G intron -    22484847 chr1:29087918(+) A-G intron -    22484847 chr1:29087999(+) A-G intron -    22484847 chr1:29088203(+) T-C intron -    22484847 chr1:29094160(+) A-G intron -    22484847 chr1:29094227(+) A-G intron -    22484847 chr1:29094571(+) A-G intron -    22484847 chr1:29094592(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	YTHDF2	chr1:29063532-29063533(+) m6A 5'UTR//exon//intron       24284625//24209618//24981863//27773536 chr1:29064132-29064133(+) m6A exon//intron       27773535 chr1:29064802-29064803(+) Y 5'UTR//CDS//exon       26075521 chr1:29069051-29069052(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr1:29069204-29069205(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr1:29069282-29069283(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:29069304-29069305(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:29069338-29069339(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:29069486-29069487(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085 chr1:29069525-29069526(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085 chr1:29069537-29069538(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085 chr1:29069544-29069545(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085 chr1:29069610-29069611(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr1:29069757-29069758(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:29069848-29069849(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:29069897-29069898(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:29069933-29069934(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:29070005-29070006(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:29070104-29070105(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr1:29070176-29070177(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:29070214-29070215(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:29070247-29070248(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:29070331-29070332(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:29070344-29070345(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:29070364-29070365(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:29082455-29082456(+) Cm intron       - chr1:29095481-29095482(+) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr1:29095543-29095544(+) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr1:29095583-29095584(+) m6A 3'UTR//exon       24981863//27773535//22608085 chr1:29095616-29095617(+) m6A 3'UTR//exon       24981863//27773535//22608085 chr1:29095623-29095624(+) m6A 3'UTR//exon       24981863//27773535//22608085 chr1:29095661-29095662(+) m6A 3'UTR       24981863//27773535//22608085 chr1:29095666-29095667(+) m6A 3'UTR       24981863//27773535//22608085 chr1:29096120-29096121(+) m6A 3'UTR       27773535 chr1:29096132-29096133(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	YTHDF2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART9-3p
Interactor2: YTHDF2

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg