Basic Information:

  VIRBase ID:  

VHID00328438

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART9-3p:  MIMAT0003419          GABARAPL2:  NM_007285     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART9-3p	GABARAPL2
miRBase Accession/Entrez ID	MIMAT0003419	11345
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ATG8//ATG8C//GATE-16//GATE16//GEF-2//GEF2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GABARAPL2	chr16:75609571(+) A-I      intronic chr16:75608875(+) A-I      intronic chr16:75608871(+) A-I      intronic chr16:75608833(+) A-I      intronic chr16:75608816(+) A-I      intronic chr16:75608800(+) A-I      intronic chr16:75605047(+) A-I      intronic chr16:75605603(+) A-I      intronic chr16:75608788(+) A-I      intronic chr16:75608722(+) A-I      intronic chr16:75608713(+) A-I      intronic chr16:75606015(+) A-I      intronic chr16:75605761(+) A-I      intronic chr16:75605675(+) A-I      intronic chr16:75609610(+) A-I      intronic chr16:75605589(+) A-I      intronic chr16:75608820(+) A-I      intronic chr16:75609333(+) A-I      intronic chr16:75604165(+) A-I      intronic chr16:75608737(+) A-I      intronic chr16:75605639(+) A-I      intronic chr16:75609664(+) A-I      intronic chr16:75608693(+) A-I      intronic chr16:75608745(+) A-I      intronic chr16:75608851(+) A-I      intronic chr16:75604106(+) A-I      intronic chr16:75605981(+) A-I      intronic chr16:75609556(+) A-I      intronic chr16:75605587(+) A-I      intronic chr16:75608736(+) A-I      intronic chr16:75605972(+) A-I      intronic chr16:75609623(+) A-I      intronic chr16:75606049(+) A-I      intronic chr16:75609572(+) A-I      intronic chr16:75605644(+) A-I      intronic chr16:75609311(+) A-I      intronic chr16:75609487(+) A-I      intronic chr16:75606009(+) A-I      intronic chr16:75609250(+) A-I      intronic chr16:75605713(+) A-I      intronic chr16:75608832(+) A-I      intronic chr16:75609533(+) A-I      intronic chr16:75609477(+) A-I      intronic chr16:75609667(+) A-I      intronic chr16:75609293(+) A-I      intronic chr16:75609323(+) A-I      intronic chr16:75606010(+) A-I      intronic chr16:75605668(+) A-I      intronic chr16:75605655(+) A-I      intronic chr16:75608945(+) A-I      intronic chr16:75608784(+) A-I      intronic chr16:75605110(+) A-I      intronic chr16:75605703(+) A-I      intronic chr16:75604063(+) A-I      intronic chr16:75609292(+) A-I      intronic chr16:75608810(+) A-I      intronic chr16:75608876(+) A-I      intronic chr16:75608811(+) A-I      intronic chr16:75609530(+) A-I      intronic chr16:75608852(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GABARAPL2	chr16:75608876(+) A-I intron -    22327324 chr16:75605587(+) A-G intron -    22484847 chr16:75608692(+) C-G intron -    22484847 chr16:75608693(+) A-G intron -    22484847 chr16:75608810(+) A-G intron -    22484847 chr16:75608851(+) A-G intron -    22484847 chr16:75608876(+) A-G intron -    22484847 chr16:75609250(+) A-G intron -    22484847 chr16:75609530(+) A-G intron -    22484847 chr16:75609556(+) A-G intron -    22484847 chr16:75609623(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GABARAPL2	chr16:75600406-75600407(+) m6A CDS       24981863 chr16:75600617-75600618(+) m6A 5'UTR//intron       - chr16:75600622-75600623(+) m6A 5'UTR//intron       - chr16:75600645-75600646(+) m6A 5'UTR//intron       - chr16:75611663-75611664(+) m6A 3'UTR//exon       27773535 chr16:75611705-75611706(+) m6A 3'UTR//exon       27773535 chr16:75611733-75611734(+) m6A 3'UTR//exon       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GABARAPL2	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART9-3p
Interactor2: GABARAPL2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg