Basic Information:

  VIRBase ID:  

VHID00327968

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART9-3p:  MIMAT0003419          CUL4A:  NM_001008895     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART9-3p	CUL4A
miRBase Accession/Entrez ID	MIMAT0003419	8451
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CUL4A	chr13:113912579(+) A-I      intronic chr13:113875941(+) A-I      intronic chr13:113916175(+) A-I      intronic chr13:113890293(+) A-I      intronic chr13:113890296(+) A-I      intronic chr13:113890298(+) A-I      intronic chr13:113912558(+) A-I      intronic chr13:113890312(+) A-I      intronic chr13:113868929(+) A-I      intronic chr13:113890327(+) A-I      intronic chr13:113905913(+) A-I      intronic chr13:113912543(+) A-I      intronic chr13:113882072(+) A-I      intronic chr13:113896945(+) A-I      intronic chr13:113897020(+) A-I      intronic chr13:113896406(+) A-I      intronic chr13:113877015(+) A-I      intronic chr13:113877014(+) A-I      intronic chr13:113895909(+) A-I      intronic chr13:113895898(+) A-I      intronic chr13:113916260(+) A-I      intronic chr13:113876967(+) A-I      intronic chr13:113868901(+) A-I      intronic chr13:113896079(+) A-I      intronic chr13:113885270(+) A-I      intronic chr13:113872336(+) A-I      intronic chr13:113882113(+) A-I      intronic chr13:113882099(+) A-I      intronic chr13:113867525(+) A-I      intronic chr13:113866842(+) A-I      intronic chr13:113912510(+) A-I      intronic chr13:113877885(+) A-I      intronic chr13:113914265(+) A-I      intronic chr13:113896531(+) A-I      intronic chr13:113867511(+) A-I      intronic chr13:113865838(+) A-I      intronic chr13:113867455(+) A-I      intronic chr13:113878637(+) A-I      intronic chr13:113867452(+) A-I      intronic chr13:113912421(+) A-I      intronic chr13:113896934(+) A-I      intronic chr13:113867440(+) A-I      intronic chr13:113877878(+) A-I      intronic chr13:113878624(+) A-I      intronic chr13:113878546(+) A-I      intronic chr13:113878520(+) A-I      intronic chr13:113878509(+) A-I      intronic chr13:113878433(+) A-I      intronic chr13:113866984(+) A-I      intronic chr13:113878412(+) A-I      intronic chr13:113877848(+) A-I      intronic chr13:113866850(+) A-I      intronic chr13:113872295(+) A-I      intronic chr13:113877841(+) A-I      intronic chr13:113877838(+) A-I      intronic chr13:113914771(+) A-I      intronic chr13:113877811(+) A-I      intronic chr13:113914749(+) A-I      intronic chr13:113914632(+) A-I      intronic chr13:113877853(+) A-I      intronic chr13:113868902(+) A-I      intronic chr13:113914631(+) A-I      intronic chr13:113877184(+) A-I      intronic chr13:113912552(+) A-I      intronic chr13:113877110(+) A-I      intronic chr13:113912422(+) A-I      intronic chr13:113877753(+) A-I      intronic chr13:113896038(+) A-I      intronic chr13:113866872(+) A-I      intronic chr13:113868852(+) A-I      intronic chr13:113916688(+) A-I      intronic chr13:113877985(+) A-I      intronic chr13:113885309(+) A-I      intronic chr13:113878608(+) A-I      intronic chr13:113877068(+) A-I      intronic chr13:113901242(+) A-I      intronic chr13:113906096(+) A-I      intronic chr13:113914610(+) A-I      intronic chr13:113877851(+) A-I      intronic chr13:113914353(+) A-I      intronic chr13:113877116(+) A-I      intronic chr13:113877039(+) A-I      intronic chr13:113877812(+) A-I      intronic chr13:113868905(+) A-I      intronic chr13:113896430(+) A-I      intronic chr13:113896529(+) A-I      intronic chr13:113901353(+) A-I      intronic chr13:113896894(+) A-I      intronic chr13:113866825(+) A-I      intronic chr13:113877758(+) A-I      intronic chr13:113906021(+) A-I      intronic chr13:113868943(+) A-I      intronic chr13:113896937(+) A-I      intronic chr13:113865729(+) A-I      intronic chr13:113911513(+) A-I      intronic chr13:113882008(+) A-I      intronic chr13:113895929(+) A-I      intronic chr13:113897045(+) A-I      intronic chr13:113896375(+) A-I      intronic chr13:113865928(+) A-I      intronic chr13:113885116(+) A-I      intronic chr13:113911502(+) A-I      intronic chr13:113877766(+) A-I      intronic chr13:113896353(+) A-I      intronic chr13:113912401(+) A-I      intronic chr13:113883321(+) A-I      intronic chr13:113882236(+) A-I      intronic chr13:113896030(+) A-I      intronic chr13:113896948(+) A-I      intronic chr13:113877897(+) A-I      intronic chr13:113905866(+) A-I      intronic chr13:113877913(+) A-I      intronic chr13:113881965(+) A-I      intronic chr13:113901532(+) A-I      intronic chr13:113914713(+) A-I      intronic chr13:113916195(+) A-I      intronic chr13:113877829(+) A-I      intronic chr13:113866864(+) A-I      intronic chr13:113876971(+) A-I      intronic chr13:113901248(+) A-I      intronic chr13:113865973(+) A-I      intronic chr13:113916716(+) A-I      intronic chr13:113877773(+) A-I      intronic chr13:113916920(+) A-I      intronic chr13:113905833(+) A-I      intronic chr13:113865961(+) A-I      intronic chr13:113868903(+) A-I      intronic chr13:113912465(+) A-I      intronic chr13:113866847(+) A-I      intronic chr13:113877973(+) A-I      intronic chr13:113876021(+) A-I      intronic chr13:113866858(+) A-I      intronic chr13:113882172(+) A-I      intronic chr13:113877894(+) A-I      intronic chr13:113876965(+) A-I      intronic chr13:113878674(+) A-I      intronic chr13:113865981(+) A-I      intronic chr13:113865717(+) A-I      intronic chr13:113872405(+) A-I      intronic chr13:113901357(+) A-I      intronic chr13:113877155(+) A-I      intronic chr13:113881964(+) A-I      intronic chr13:113911368(+) A-I      intronic chr13:113865920(+) A-I      intronic chr13:113872429(+) A-I      intronic chr13:113896979(+) A-I      intronic chr13:113896398(+) A-I      intronic chr13:113896918(+) A-I      intronic chr13:113896490(+) A-I      intronic chr13:113914712(+) A-I      intronic chr13:113883415(+) A-I      intronic chr13:113866128(+) A-I      intronic chr13:113901241(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CUL4A	chr13:113877829(+) A-I intron -    22327324 chr13:113876965(+) A-I intron -    21960545 chr13:113876971(+) A-I intron -    21960545 chr13:113877116(+) A-I intron -    21960545 chr13:113877753(+) A-I intron -    21960545 chr13:113877758(+) A-I intron -    21960545 chr13:113877766(+) A-I intron -    21960545 chr13:113881964(+) A-I intron -    21960545 chr13:113868852(+) A-I intron -    21960545 chr13:113901241(+) A-G intron -    22484847 chr13:113901242(+) A-G intron -    22484847 chr13:113901248(+) A-G intron -    22484847 chr13:113901357(+) A-G intron -    22484847 chr13:113901532(+) A-G intron -    22484847 chr13:113868852(+) A-G intron -    22484847 chr13:113877116(+) A-G intron -    22484847 chr13:113877155(+) A-G intron -    22484847 chr13:113877758(+) A-G intron -    22484847 chr13:113877812(+) A-G intron -    22484847 chr13:113877829(+) A-G intron -    22484847 chr13:113877851(+) A-G intron -    22484847 chr13:113877853(+) A-G intron -    22484847 chr13:113877885(+) A-G intron -    22484847 chr13:113896918(+) A-G intron -    22484847 chr13:113896945(+) A-G intron -    22484847 chr13:113896979(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CUL4A	chr13:113862788-113862789(+) m6A 5'UTR       25456834 chr13:113862801-113862802(+) m1A 5'UTR       26863196 chr13:113862853-113862854(+) m6A 5'UTR       24284625//25456834 chr13:113862862-113862863(+) m6A 5'UTR       24284625//25456834 chr13:113862906-113862907(+) m6A 5'UTR       24284625//25456834 chr13:113863092-113863093(+) m6A 5'UTR//intron       24284625 chr13:113864080-113864081(+) m6A CDS//exon//intron       24209618//22575960 chr13:113884005-113884006(+) m6A 3'UTR//exon//intron       25456834//22608085 chr13:113884051-113884052(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//22608085 chr13:113884083-113884084(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22608085 chr13:113884156-113884157(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr13:113884168-113884169(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr13:113884283-113884284(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr13:113884337-113884338(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863 chr13:113884425-113884426(+) m6A 3'UTR//intron       24284625//24209618 chr13:113897318-113897319(+) m6A CDS       - chr13:113897324-113897325(+) m6A CDS       - chr13:113897336-113897337(+) m6A CDS       - chr13:113897345-113897346(+) m6A CDS       - chr13:113897354-113897355(+) m6A CDS       - chr13:113897363-113897364(+) m6A CDS       - chr13:113897448-113897449(+) m6A CDS       24981863 chr13:113897466-113897467(+) m6A CDS       24981863 chr13:113898795-113898796(+) m6A CDS//exon       24981863 chr13:113909362-113909363(+) m6A CDS//exon       24981863 chr13:113909436-113909437(+) m6A CDS//exon       24981863 chr13:113914928-113914929(+) m6A CDS//intron       24981863 chr13:113914964-113914965(+) m6A CDS//intron       27773535 chr13:113915013-113915014(+) m6A CDS//intron       24284625//27773535//22608085 chr13:113917837-113917838(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr13:113917843-113917844(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr13:113917858-113917859(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr13:113917864-113917865(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr13:113917925-113917926(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr13:113917975-113917976(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr13:113917997-113917998(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr13:113918054-113918055(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr13:113918149-113918150(+) Gm 3'UTR       - chr13:113918157-113918158(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr13:113918267-113918268(+) m6A 3'UTR       24284625//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CUL4A	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART9-3p
Interactor2: CUL4A

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg