Basic Information:

  VIRBase ID:  

VHID00327654

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART9-3p:  MIMAT0003419          DNAJC3:  NM_006260     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART9-3p	DNAJC3
miRBase Accession/Entrez ID	MIMAT0003419	5611
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ACPHD//ERdj6//HP58//P58//p58(IPK)//P58IPK//PRKRI

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	DNAJC3	chr13:96403362(+) A-I      intronic chr13:96403395(+) A-I      intronic chr13:96401848(+) A-I      intronic chr13:96401850(+) A-I      intronic chr13:96401855(+) A-I      intronic chr13:96401889(+) A-I      intronic chr13:96401911(+) A-I      intronic chr13:96401912(+) A-I      intronic chr13:96401913(+) A-I      intronic chr13:96401952(+) A-I      intronic chr13:96401956(+) A-I      intronic chr13:96401970(+) A-I      intronic chr13:96401971(+) A-I      intronic chr13:96401973(+) A-I      intronic chr13:96401982(+) A-I      intronic chr13:96402269(+) A-I      intronic chr13:96402325(+) A-I      intronic chr13:96402331(+) A-I      intronic chr13:96445836(+) A-I      3'UTR chr13:96445844(+) A-I      3'UTR chr13:96445857(+) A-I      3'UTR chr13:96445863(+) A-I      3'UTR chr13:96445892(+) A-I      3'UTR chr13:96402334(+) A-I      intronic chr13:96402337(+) A-I      intronic chr13:96403970(+) A-I      intronic chr13:96403992(+) A-I      intronic chr13:96403993(+) A-I      intronic chr13:96404000(+) A-I      intronic chr13:96403331(+) A-I      intronic chr13:96402863(+) A-I      intronic chr13:96385840(+) A-I      intronic chr13:96402844(+) A-I      intronic chr13:96362097(+) A-I      intronic chr13:96402903(+) A-I      intronic chr13:96402146(+) A-I      intronic chr13:96402938(+) A-I      intronic chr13:96368004(+) A-I      intronic chr13:96402843(+) A-I      intronic chr13:96382299(+) A-I      intronic chr13:96407538(+) A-I      intronic chr13:96367925(+) A-I      intronic chr13:96402857(+) A-I      intronic chr13:96362049(+) A-I      intronic chr13:96361955(+) A-I      intronic chr13:96402828(+) A-I      intronic chr13:96403017(+) A-I      intronic chr13:96402814(+) A-I      intronic chr13:96402210(+) A-I      intronic chr13:96384052(+) A-I      intronic chr13:96367907(+) A-I      intronic chr13:96400815(+) A-I      intronic chr13:96402183(+) A-I      intronic chr13:96367468(+) A-I      intronic chr13:96402049(+) A-I      intronic chr13:96366542(+) A-I      intronic chr13:96402048(+) A-I      intronic chr13:96368265(+) A-I      intronic chr13:96367875(+) A-I      intronic chr13:96362078(+) A-I      intronic chr13:96363648(+) A-I      intronic chr13:96400963(+) A-I      intronic chr13:96437807(+) A-I      intronic chr13:96400939(+) A-I      intronic chr13:96363489(+) A-I      intronic chr13:96362984(+) A-I      intronic chr13:96362670(+) A-I      intronic chr13:96402974(+) A-I      intronic chr13:96402965(+) A-I      intronic chr13:96402905(+) A-I      intronic chr13:96362597(+) A-I      intronic chr13:96402867(+) A-I      intronic chr13:96363631(+) A-I      intronic chr13:96403333(+) A-I      intronic chr13:96368015(+) A-I      intronic chr13:96419010(+) A-I      intronic chr13:96367816(+) A-I      intronic chr13:96421043(+) A-I      intronic chr13:96419165(+) A-I      intronic chr13:96362516(+) A-I      intronic chr13:96402864(+) A-I      intronic chr13:96419136(+) A-I      intronic chr13:96410635(+) A-I      intronic chr13:96410536(+) A-I      intronic chr13:96407544(+) A-I      intronic chr13:96402987(+) A-I      intronic chr13:96407518(+) A-I      intronic chr13:96403342(+) A-I      intronic chr13:96410471(+) A-I      intronic chr13:96403330(+) A-I      intronic chr13:96403324(+) A-I      intronic chr13:96403282(+) A-I      intronic chr13:96403245(+) A-I      intronic chr13:96402986(+) A-I      intronic chr13:96401957(+) A-I      intronic chr13:96402411(+) A-I      intronic chr13:96402268(+) A-I      intronic chr13:96362694(+) A-I      intronic chr13:96368281(+) A-I      intronic chr13:96407668(+) A-I      intronic chr13:96403244(+) A-I      intronic chr13:96402387(+) A-I      intronic chr13:96402505(+) A-I      intronic chr13:96403334(+) A-I      intronic chr13:96400923(+) A-I      intronic chr13:96401808(+) A-I      intronic chr13:96407509(+) A-I      intronic chr13:96411616(+) A-I      intronic chr13:96363568(+) A-I      intronic chr13:96402319(+) A-I      intronic chr13:96410517(+) A-I      intronic chr13:96402282(+) A-I      intronic chr13:96401922(+) A-I      intronic chr13:96421067(+) A-I      intronic chr13:96367582(+) A-I      intronic chr13:96402323(+) A-I      intronic chr13:96403378(+) A-I      intronic chr13:96400911(+) A-I      intronic chr13:96357800(+) A-I      intronic chr13:96402868(+) A-I      intronic chr13:96363628(+) A-I      intronic chr13:96419054(+) A-I      intronic chr13:96402890(+) A-I      intronic chr13:96368266(+) A-I      intronic chr13:96419055(+) A-I      intronic chr13:96363747(+) A-I      intronic chr13:96403368(+) A-I      intronic chr13:96403404(+) A-I      intronic chr13:96410772(+) A-I      intronic chr13:96401852(+) A-I      intronic chr13:96403398(+) A-I      intronic chr13:96403307(+) A-I      intronic chr13:96401860(+) A-I      intronic chr13:96402893(+) A-I      intronic chr13:96402410(+) A-I      intronic chr13:96362668(+) A-I      intronic chr13:96402948(+) A-I      intronic chr13:96410634(+) A-I      intronic chr13:96400949(+) A-I      intronic chr13:96403298(+) A-I      intronic chr13:96402783(+) A-I      intronic chr13:96402945(+) A-I      intronic chr13:96349045(+) A-I      intronic chr13:96402951(+) A-I      intronic chr13:96403294(+) A-I      intronic chr13:96400894(+) A-I      intronic chr13:96402418(+) A-I      intronic chr13:96363652(+) A-I      intronic chr13:96407584(+) A-I      intronic chr13:96403429(+) A-I      intronic chr13:96407655(+) A-I      intronic chr13:96363575(+) A-I      intronic chr13:96367800(+) A-I      intronic chr13:96410488(+) A-I      intronic chr13:96362964(+) A-I      intronic chr13:96445923(+) A-I      3'UTR chr13:96445898(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	DNAJC3	chr13:96401808(+) A-G intron -    22484847 chr13:96401852(+) A-G intron -    22484847 chr13:96401860(+) A-G intron -    22484847 chr13:96401922(+) A-G intron -    22484847 chr13:96401957(+) A-G intron -    22484847 chr13:96402268(+) A-G intron -    22484847 chr13:96402319(+) A-G intron -    22484847 chr13:96402323(+) A-G intron -    22484847 chr13:96402387(+) A-G intron -    22484847 chr13:96402411(+) A-G intron -    22484847 chr13:96402418(+) A-G intron -    22484847 chr13:96363568(+) A-G intron -    22484847 chr13:96403333(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	DNAJC3	chr13:96329507-96329508(+) m6A 5'UTR       24981863 chr13:96416162-96416163(+) Am CDS       - chr13:96438209-96438210(+) m6A CDS       27773535 chr13:96438220-96438221(+) m6A CDS       27773535 chr13:96438280-96438281(+) m6A CDS       27773535 chr13:96443216-96443217(+) m6A CDS       24284625//25456834//24981863//27773535//22575960//22608085 chr13:96443253-96443254(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr13:96443284-96443285(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr13:96443328-96443329(+) m6A 3'UTR       24284625//24981863//22608085 chr13:96443349-96443350(+) m6A 3'UTR       24284625//24981863//22608085 chr13:96443707-96443708(+) m6A 3'UTR       24284625//24981863//22608085 chr13:96443713-96443714(+) m6A 3'UTR       24284625//24981863//22608085 chr13:96443740-96443741(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr13:96443857-96443858(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr13:96443871-96443872(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr13:96443906-96443907(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr13:96443966-96443967(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr13:96443990-96443991(+) m6A 3'UTR       24981863//22608085 chr13:96444006-96444007(+) m6A 3'UTR       24981863//22608085 chr13:96447024-96447025(+) m6A 3'UTR       27773535 chr13:96447091-96447092(+) m6A 3'UTR       27773535 chr13:96447138-96447139(+) m6A 3'UTR       27773535 chr13:96447163-96447164(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	DNAJC3	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART9-3p
Interactor2: DNAJC3

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg