Detail Information

Basic Information:


  VIRBase ID:  

VHID00326583

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART8-3p:           FAM13C:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART8-3p FAM13C
miRBase
Accession/Entrez ID		 MIMAT0003418 220965
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - FAM13C1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR FAM13C
chr10:61007127(-) A-I      3'UTR
chr10:61007128(-) A-I      3'UTR
chr10:61007151(-) A-I      3'UTR
chr10:61007159(-) A-I      3'UTR
chr10:61007175(-) A-I      3'UTR
chr10:61007121(-) A-I      3'UTR
chr10:61007155(-) A-I      3'UTR
chr10:61007158(-) A-I      3'UTR
chr10:61007156(-) A-I      3'UTR
chr10:61007169(-) A-I      3'UTR
chr10:61007166(-) A-I      3'UTR
chr10:61092887(-) A-I      intronic
chr10:61111607(-) A-I      intronic
chr10:61009016(-) A-I      intronic
chr10:61063786(-) A-I      intronic
chr10:61052940(-) A-I      intronic
chr10:61111737(-) A-I      intronic
chr10:61075854(-) A-I      intronic
chr10:61111597(-) A-I      intronic
chr10:61075827(-) A-I      intronic
chr10:61109296(-) A-I      intronic
chr10:61052972(-) A-I      intronic
chr10:61052962(-) A-I      intronic
chr10:61014501(-) A-I      intronic
chr10:61052939(-) A-I      intronic
chr10:61089312(-) A-I      intronic
chr10:61046192(-) A-I      intronic
chr10:61046549(-) A-I      intronic
chr10:61046040(-) A-I      intronic
chr10:61046537(-) A-I      intronic
chr10:61048089(-) A-I      intronic
chr10:61092874(-) A-I      intronic
chr10:61046931(-) A-I      intronic
chr10:61046153(-) A-I      intronic
chr10:61014541(-) A-I      intronic
chr10:61052926(-) A-I      intronic
chr10:61053042(-) A-I      intronic
chr10:61092850(-) A-I      intronic
chr10:61046231(-) A-I      intronic
chr10:61018191(-) A-I      intronic
chr10:61051820(-) A-I      intronic
chr10:61046223(-) A-I      intronic
chr10:61051723(-) A-I      intronic
chr10:61018224(-) A-I      intronic
chr10:61108466(-) A-I      intronic
chr10:61053125(-) A-I      intronic
chr10:61089322(-) A-I      intronic
chr10:61108547(-) A-I      intronic
chr10:61093126(-) A-I      intronic
chr10:61111720(-) A-I      intronic
chr10:61103951(-) A-I      intronic
chr10:61040554(-) A-I      intronic
chr10:61040553(-) A-I      intronic
chr10:61040496(-) A-I      intronic
chr10:61040462(-) A-I      intronic
chr10:61038837(-) A-I      intronic
chr10:61017987(-) A-I      intronic
chr10:61018212(-) A-I      intronic
chr10:61052788(-) A-I      intronic
chr10:61053282(-) A-I      intronic
chr10:61053188(-) A-I      intronic
chr10:61058881(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FAM13C
chr10:61014183-61014184(-) m6A 3'UTR//CDS       24284625
chr10:61014189-61014190(-) m6A 3'UTR//CDS       24284625
chr10:61022261-61022262(-) m6A 3'UTR//CDS//intron       24284625
chr10:61029703-61029704(-) m6A 3'UTR//CDS//exon//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate FAM13C
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART8-3p
Interactor2: FAM13C

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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