Detail Information

Basic Information:


  VIRBase ID:  

VHID00326047

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART8-3p:           NCALD:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART8-3p NCALD
miRBase
Accession/Entrez ID		 MIMAT0003418 83988
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NCALD
chr8:102742648(-) A-I      intronic
chr8:102742646(-) A-I      intronic
chr8:102742645(-) A-I      intronic
chr8:103072410(-) A-I      intronic
chr8:102861245(-) A-I      intronic
chr8:102933106(-) A-I      intronic
chr8:102780771(-) A-I      intronic
chr8:102742560(-) A-I      intronic
chr8:102780789(-) A-I      intronic
chr8:102745099(-) A-I      intronic
chr8:102780851(-) A-I      intronic
chr8:102831198(-) A-I      intronic
chr8:102780774(-) A-I      intronic
chr8:102743626(-) A-I      intronic
chr8:102753886(-) A-I      intronic
chr8:102753933(-) A-I      intronic
chr8:102753937(-) A-I      intronic
chr8:102753938(-) A-I      intronic
chr8:102842621(-) A-I      intronic
chr8:102744940(-) A-I      intronic
chr8:102744960(-) A-I      intronic
chr8:102744908(-) A-I      intronic
chr8:102744999(-) A-I      intronic
chr8:102745096(-) A-I      intronic
chr8:102754030(-) A-I      intronic
chr8:102842706(-) A-I      intronic
chr8:102895567(-) A-I      intronic
chr8:103094594(-) A-I      intronic
chr8:103118436(-) A-I      intronic
chr8:102743617(-) A-I      intronic
chr8:102743619(-) A-I      intronic
chr8:102743630(-) A-I      intronic
chr8:103118442(-) A-I      intronic
chr8:103118480(-) A-I      intronic
chr8:103118483(-) A-I      intronic
chr8:102744917(-) A-I      intronic
chr8:102770290(-) A-I      intronic
chr8:102734094(-) A-I      intronic
chr8:102779000(-) A-I      intronic
chr8:102778986(-) A-I      intronic
chr8:102774913(-) A-I      intronic
chr8:102744970(-) A-I      intronic
chr8:103052554(-) A-I      intronic
chr8:102856752(-) A-I      intronic
chr8:103115813(-) A-I      intronic
chr8:102780837(-) A-I      intronic
chr8:102895480(-) A-I      intronic
chr8:103112206(-) A-I      intronic
chr8:102745090(-) A-I      intronic
chr8:102778920(-) A-I      intronic
chr8:102778933(-) A-I      intronic
chr8:103058910(-) A-I      intronic
chr8:102780854(-) A-I      intronic
chr8:103058818(-) A-I      intronic
chr8:103094600(-) A-I      intronic
chr8:102717061(-) A-I      intronic
chr8:102742625(-) A-I      intronic
chr8:102778897(-) A-I      intronic
chr8:102868417(-) A-I      intronic
chr8:102774942(-) A-I      intronic
chr8:102780797(-) A-I      intronic
chr8:102778942(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NCALD
chr8:102884572(-) A-I intron -    22327324
chr8:102806280(-) T-C intron -    22484847
chr8:102870610(-) T-C intron -    22484847
chr8:102742625(-) A-G intron -    22484847
chr8:102750780(-) G-T intron -    22484847
chr8:102775029(-) T-A intron -    22484847
chr8:102778897(-) A-G intron -    22484847
chr8:102778915(-) T-G intron -    22484847
chr8:102778920(-) A-G intron -    22484847
chr8:102778933(-) A-G intron -    22484847
chr8:102778942(-) A-G intron -    22484847
chr8:102778983(-) A-G intron -    22484847
chr8:102779031(-) A-G intron -    22484847
chr8:102780745(-) A-G intron -    22484847
chr8:102780797(-) A-G intron -    22484847
chr8:102780837(-) A-G intron -    22484847
chr8:102780854(-) A-G intron -    22484847
chr8:102877032(-) A-G intron -    22484847
chr8:102915716(-) T-C intron -    22484847
chr8:103052712(-) C-T intron -    22484847
chr8:103058818(-) A-G intron -    22484847
chr8:103072320(-) A-G intron -    22484847
chr8:103088124(-) T-C intron -    22484847
chr8:103101547(-) C-T intron -    22484847
chr8:103105373(-) A-G intron -    22484847
chr8:103112130(-) T-C intron -    22484847
chr8:103115781(-) G-A intron -    22484847
chr8:103115813(-) A-G intron -    22484847
chr8:103118391(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NCALD
chr8:102698993-102698994(-) m6A 3'UTR       24981863//27773535
chr8:102699015-102699016(-) m6A 3'UTR       24981863//27773535
chr8:102699036-102699037(-) m6A 3'UTR       24981863//27773535
chr8:102699051-102699052(-) m6A 3'UTR       24981863//27773535
chr8:102699852-102699853(-) m6A 3'UTR       -
chr8:102699867-102699868(-) m6A 3'UTR       -
chr8:102699941-102699942(-) m6A 3'UTR       -
chr8:102700055-102700056(-) m6A 3'UTR       -
chr8:102700701-102700702(-) m6A 3'UTR       27773535
chr8:102700775-102700776(-) m6A 3'UTR//exon       27773535
chr8:102700841-102700842(-) m6A 3'UTR//exon       27773535
chr8:102700846-102700847(-) m6A 3'UTR//exon       27773535
chr8:102700870-102700871(-) m6A 3'UTR//CDS//exon       27773535
chr8:102700971-102700972(-) m6A 3'UTR//exon//intron       24981863//27773535
chr8:102701034-102701035(-) m6A 3'UTR//exon//intron       24981863//27773535
chr8:102701075-102701076(-) m6A 3'UTR//exon//intron       24981863//27773535
chr8:102701148-102701149(-) m6A 3'UTR//exon//intron       24981863//27773535
chr8:102701153-102701154(-) m6A 3'UTR//exon//intron       24981863//27773535
chr8:102701207-102701208(-) m6A 3'UTR//exon//intron       24981863//27773535
chr8:102701235-102701236(-) m6A 3'UTR//exon//intron       24981863//27773535
chr8:102701322-102701323(-) m6A 3'UTR//CDS//exon//intron       24981863//27773535//22608085
chr8:102701450-102701451(-) m6A 3'UTR//exon//intron       27773535
chr8:102701629-102701630(-) m6A CDS//exon//intron       27773535
chr8:102705032-102705033(-) m6A CDS//exon//intron       27773535
chr8:102705057-102705058(-) m6A CDS//exon//intron       27773535
chr8:102705219-102705220(-) m6A exon//intron       27773535
chr8:102706580-102706581(-) m6A exon//intron       27773535
chr8:102706608-102706609(-) m6A exon//intron       27773535
chr8:102731615-102731616(-) m6A CDS       25456834//24981863//28052920//27773535//22575960//22608085
chr8:102731622-102731623(-) m6A CDS       25456834//24981863//28052920//27773535//22575960//22608085
chr8:102731696-102731697(-) m6A CDS       25456834//24981863//28052920//26404942//27773535//22608085
chr8:102731734-102731735(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//22608085
chr8:102731747-102731748(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//22608085
chr8:102731795-102731796(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//22608085
chr8:102731813-102731814(-) m6A CDS       25456834//24981863//27773535//27371828
chr8:102731843-102731844(-) m6A CDS       25456834//24981863//27773535//27371828
chr8:102731848-102731849(-) m6A CDS       25456834//24981863//27773535//27371828
chr8:102733510-102733511(-) m6A 5'UTR//intron       27773535
chr8:102733516-102733517(-) m6A 5'UTR//intron       27773535
chr8:102733554-102733555(-) m6A 5'UTR//intron       -
chr8:102800925-102800926(-) m6A exon//intron       27773535
chr8:102800952-102800953(-) m6A exon//intron       27773535
chr8:102800994-102800995(-) m6A exon//intron       27773535
chr8:102801065-102801066(-) m6A 5'UTR//exon//intron       27773535
chr8:102801096-102801097(-) m6A 5'UTR//exon//intron       27773535
chr8:102803119-102803120(-) m6A 5'UTR//exon//intron       24981863
chr8:102803166-102803167(-) m6A 5'UTR//exon//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NCALD
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART8-3p
Interactor2: NCALD

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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