Basic Information:

  VIRBase ID:  

VHID00325417

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART8-3p:  MIMAT0003418          PDP1:  NM_018444     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART8-3p	PDP1
miRBase Accession/Entrez ID	MIMAT0003418	54704
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PDH//PDP//PDPC//PPM2A//PPM2C

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PDP1	chr8:94931500(+) A-I      intronic chr8:94931579(+) A-I      intronic chr8:94874762(+) A-I      intronic chr8:94871746(+) A-I      intronic chr8:94871648(+) A-I      intronic chr8:94871741(+) A-I      intronic chr8:94871797(+) A-I      intronic chr8:94871727(+) A-I      intronic chr8:94878376(+) A-I      intronic chr8:94871647(+) A-I      intronic chr8:94879012(+) A-I      intronic chr8:94871592(+) A-I      intronic chr8:94871747(+) A-I      intronic chr8:94878325(+) A-I      intronic chr8:94871751(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PDP1	chr8:94934334-94934335(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr8:94934376-94934377(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr8:94934468-94934469(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr8:94934660-94934661(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:94934689-94934690(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:94934760-94934761(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr8:94934800-94934801(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr8:94934926-94934927(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:94934948-94934949(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:94935249-94935250(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:94935270-94935271(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:94935303-94935304(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:94935407-94935408(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:94935553-94935554(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:94935654-94935655(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:94935685-94935686(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:94935766-94935767(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:94937393-94937394(+) m6A 3'UTR       24981863//22608085 chr8:94937408-94937409(+) m6A 3'UTR       24981863//26404942//22608085 chr8:94937419-94937420(+) m6A 3'UTR       24981863//26404942//22608085 chr8:94937477-94937478(+) m6A 3'UTR       24981863//26404942//22608085 chr8:94937674-94937675(+) m6A 3'UTR       24981863//26404942 chr8:94937687-94937688(+) m6A 3'UTR       24981863//26404942 chr8:94937721-94937722(+) m6A 3'UTR       24981863//26404942 chr8:94937837-94937838(+) m6A 3'UTR       26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PDP1	Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART8-3p
Interactor2: PDP1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg