Detail Information

Basic Information:


  VIRBase ID:  

VHID00322771

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART8-5p:           PJA2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART8-5p PJA2
miRBase
Accession/Entrez ID		 MIMAT0003417 9867
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - Neurodap1//RNF131

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PJA2
chr5:108732301(-) A-I      intronic
chr5:108674173(-) A-I      intronic
chr5:108674286(-) A-I      intronic
chr5:108716740(-) A-I      intronic
chr5:108716747(-) A-I      intronic
chr5:108729841(-) A-I      intronic
chr5:108731531(-) A-I      intronic
chr5:108731181(-) A-I      intronic
chr5:108730954(-) A-I      intronic
chr5:108732260(-) A-I      intronic
chr5:108729860(-) A-I      intronic
chr5:108730007(-) A-I      intronic
chr5:108693841(-) A-I      intronic
chr5:108674299(-) A-I      intronic
chr5:108731579(-) A-I      intronic
chr5:108715906(-) A-I      intronic
chr5:108716733(-) A-I      intronic
chr5:108731618(-) A-I      intronic
chr5:108732299(-) A-I      intronic
chr5:108732298(-) A-I      intronic
chr5:108715891(-) A-I      intronic
chr5:108716459(-) A-I      intronic
chr5:108739602(-) A-I      intronic
chr5:108732252(-) A-I      intronic
chr5:108731512(-) A-I      intronic
chr5:108730988(-) A-I      intronic
chr5:108733443(-) A-I      intronic
chr5:108729982(-) A-I      intronic
chr5:108731026(-) A-I      intronic
chr5:108739603(-) A-I      intronic
chr5:108733358(-) A-I      intronic
chr5:108732131(-) A-I      intronic
chr5:108674218(-) A-I      intronic
chr5:108732265(-) A-I      intronic
chr5:108731619(-) A-I      intronic
chr5:108733374(-) A-I      intronic
chr5:108674149(-) A-I      intronic
chr5:108719462(-) A-I      intronic
chr5:108741856(-) A-I      intronic
chr5:108715892(-) A-I      intronic
chr5:108732292(-) A-I      intronic
chr5:108729335(-) A-I      intronic
chr5:108731184(-) A-I      intronic
chr5:108731047(-) A-I      intronic
chr5:108732225(-) A-I      intronic
chr5:108732399(-) A-I      intronic
chr5:108729950(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PJA2
chr5:108671198(-) A-I exon 3'UTR    22327324
chr5:108674158(-) A-G intron -    22484847
chr5:108719462(-) A-G intron -    22484847
chr5:108728261(-) G-T intron -    22484847
chr5:108729950(-) A-G intron -    22484847
chr5:108729982(-) A-G intron -    22484847
chr5:108731075(-) A-G intron -    22484847
chr5:108731184(-) A-G intron -    22484847
chr5:108732252(-) A-G intron -    22484847
chr5:108732292(-) A-G intron -    22484847
chr5:108733374(-) A-G intron -    22484847
chr5:108674411(-) G-A intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PJA2
chr5:108698719-108698720(-) m6A CDS       24981863//27773535
chr5:108704285-108704286(-) m6A CDS       24981863//27773535
chr5:108704326-108704327(-) m6A CDS       24981863//27773535
chr5:108704352-108704353(-) m6A CDS       24981863//27773535
chr5:108714022-108714023(-) m6A CDS       24981863//27773535//27371828//22608085
chr5:108714170-108714171(-) m6A CDS       24981863//28052920//26404942//27773535//22608085
chr5:108714196-108714197(-) m6A CDS       24981863//28052920//26404942//27773535//22608085
chr5:108714204-108714205(-) m6A CDS       24981863//28052920//26404942//27773535//22608085
chr5:108714227-108714228(-) m6A CDS       24981863//28052920//26404942//27773535//22608085
chr5:108714254-108714255(-) m6A CDS       24981863//28052920//27773535//22608085
chr5:108714273-108714274(-) m6A CDS       24981863//28052920//27773535//22608085
chr5:108714299-108714300(-) m6A CDS       24981863//27773535//22608085
chr5:108714347-108714348(-) m6A CDS       24981863//27773535
chr5:108714352-108714353(-) m6A CDS       24981863//27773535
chr5:108714356-108714357(-) m6A CDS       27773535
chr5:108714383-108714384(-) m6A CDS       27773535
chr5:108714570-108714571(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr5:108714668-108714669(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22608085
chr5:108714690-108714691(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22608085
chr5:108717297-108717298(-) m6A CDS//exon       24981863
chr5:108717318-108717319(-) m6A CDS//exon       24981863
chr5:108717347-108717348(-) m6A CDS//exon       24981863
chr5:108717366-108717367(-) m6A CDS//exon       24981863
chr5:108717397-108717398(-) m6A CDS//exon       24981863
chr5:108719158-108719159(-) m6A 5'UTR//exon       24981863
chr5:108745604-108745605(-) m1A 5'UTR       26863196

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PJA2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART8-5p
Interactor2: PJA2

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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