Basic Information:

  VIRBase ID:  

VHID00321107

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART7-3p:  MIMAT0003416          THAP1:  NM_199003     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART7-3p	THAP1
miRBase Accession/Entrez ID	MIMAT0003416	55145
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DYT6

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	THAP1	chr8:42696492(-) A-I      intronic chr8:42694861(-) A-I      intronic chr8:42694764(-) A-I      intronic chr8:42694759(-) A-I      intronic chr8:42693788(-) A-I      intronic chr8:42693786(-) A-I      intronic chr8:42695252(-) A-I      intronic chr8:42694867(-) A-I      intronic chr8:42696480(-) A-I      intronic chr8:42695944(-) A-I      intronic chr8:42695168(-) A-I      intronic chr8:42696581(-) A-I      intronic chr8:42695095(-) A-I      intronic chr8:42696627(-) A-I      intronic chr8:42694772(-) A-I      intronic chr8:42695281(-) A-I      intronic chr8:42695174(-) A-I      intronic chr8:42696572(-) A-I      intronic chr8:42695938(-) A-I      intronic chr8:42696079(-) A-I      intronic chr8:42695930(-) A-I      intronic chr8:42696540(-) A-I      intronic chr8:42695122(-) A-I      intronic chr8:42696010(-) A-I      intronic chr8:42693578(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	THAP1	chr8:42695143(-) A-G intron -    22484847 chr8:42695930(-) A-G intron -    22484847 chr8:42695938(-) A-G intron -    22484847 chr8:42696010(-) A-G intron -    22484847 chr8:42696079(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	THAP1	chr8:42692873-42692874(-) m6A 3'UTR       27773535 chr8:42692884-42692885(-) m6A 3'UTR       27773535 chr8:42692997-42692998(-) m6A 3'UTR       24981863//27773535 chr8:42693253-42693254(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//27371828//22608085 chr8:42693272-42693273(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//27371828//22608085 chr8:42693287-42693288(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//27371828//22608085 chr8:42693373-42693374(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr8:42693452-42693453(-) m6A CDS//intron       24981863//27773535//22608085 chr8:42694413-42694414(-) m6A CDS//exon//intron       27773535//22608085 chr8:42694457-42694458(-) m6A CDS//exon//intron       24981863//27773535//22608085 chr8:42694464-42694465(-) m6A CDS//exon//intron       24981863//27773535//22608085 chr8:42697655-42697656(-) m6A exon//intron       27773535 chr8:42697669-42697670(-) m6A exon//intron       27773535 chr8:42698291-42698292(-) m6A 5'UTR       27773535//27371828 chr8:42698402-42698403(-) m6A 5'UTR       24981863//27773535//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART7-3p	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	THAP1	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART7-3p
Interactor2: THAP1

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	miRanda//PARalyzer//PITA//Targetscan
Support Database	RepTar//ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	RepTar//ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	Downregulation
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.