Basic Information:

  VIRBase ID:  

VHID00321047

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6055

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART7-3p:  MIMAT0003416          SLC35F2:  NM_017515     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART7-3p	SLC35F2
miRBase Accession/Entrez ID	MIMAT0003416	54733
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HSNOV1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC35F2	chr11:107744240(-) A-I      intronic chr11:107744243(-) A-I      intronic chr11:107744275(-) A-I      intronic chr11:107744211(-) A-I      intronic chr11:107672864(-) A-I      intronic chr11:107671864(-) A-I      intronic chr11:107744207(-) A-I      intronic chr11:107744208(-) A-I      intronic chr11:107744209(-) A-I      intronic chr11:107744210(-) A-I      intronic chr11:107669680(-) A-I      intronic chr11:107666773(-) A-I      intronic chr11:107668883(-) A-I      intronic chr11:107668975(-) A-I      intronic chr11:107669636(-) A-I      intronic chr11:107669645(-) A-I      intronic chr11:107669678(-) A-I      intronic chr11:107669716(-) A-I      intronic chr11:107669780(-) A-I      intronic chr11:107670382(-) A-I      intronic chr11:107670384(-) A-I      intronic chr11:107670393(-) A-I      intronic chr11:107671722(-) A-I      intronic chr11:107671795(-) A-I      intronic chr11:107672773(-) A-I      intronic chr11:107672782(-) A-I      intronic chr11:107672877(-) A-I      intronic chr11:107677926(-) A-I      intronic chr11:107678076(-) A-I      intronic chr11:107678131(-) A-I      intronic chr11:107678169(-) A-I      intronic chr11:107678421(-) A-I      intronic chr11:107682859(-) A-I      intronic chr11:107683133(-) A-I      intronic chr11:107684544(-) A-I      intronic chr11:107684570(-) A-I      intronic chr11:107684571(-) A-I      intronic chr11:107684584(-) A-I      intronic chr11:107712710(-) A-I      intronic chr11:107684604(-) A-I      intronic chr11:107685444(-) A-I      intronic chr11:107685517(-) A-I      intronic chr11:107686025(-) A-I      intronic chr11:107686031(-) A-I      intronic chr11:107686046(-) A-I      intronic chr11:107686058(-) A-I      intronic chr11:107687097(-) A-I      intronic chr11:107687756(-) A-I      intronic chr11:107687759(-) A-I      intronic chr11:107687786(-) A-I      intronic chr11:107687878(-) A-I      intronic chr11:107670463(-) A-I      intronic chr11:107710638(-) A-I      intronic chr11:107687939(-) A-I      intronic chr11:107688543(-) A-I      intronic chr11:107688745(-) A-I      intronic chr11:107688761(-) A-I      intronic chr11:107690789(-) A-I      intronic chr11:107677989(-) A-I      intronic chr11:107690898(-) A-I      intronic chr11:107683163(-) A-I      intronic chr11:107696236(-) A-I      intronic chr11:107696362(-) A-I      intronic chr11:107697158(-) A-I      intronic chr11:107698623(-) A-I      intronic chr11:107698626(-) A-I      intronic chr11:107698631(-) A-I      intronic chr11:107702175(-) A-I      intronic chr11:107704096(-) A-I      intronic chr11:107704121(-) A-I      intronic chr11:107705289(-) A-I      intronic chr11:107705293(-) A-I      intronic chr11:107709224(-) A-I      intronic chr11:107709466(-) A-I      intronic chr11:107709548(-) A-I      intronic chr11:107709587(-) A-I      intronic chr11:107709995(-) A-I      intronic chr11:107710007(-) A-I      intronic chr11:107710024(-) A-I      intronic chr11:107710087(-) A-I      intronic chr11:107710092(-) A-I      intronic chr11:107710472(-) A-I      intronic chr11:107710490(-) A-I      intronic chr11:107710504(-) A-I      intronic chr11:107710518(-) A-I      intronic chr11:107710558(-) A-I      intronic chr11:107710583(-) A-I      intronic chr11:107710611(-) A-I      intronic chr11:107710630(-) A-I      intronic chr11:107712072(-) A-I      intronic chr11:107726667(-) A-I      intronic chr11:107712157(-) A-I      intronic chr11:107717976(-) A-I      intronic chr11:107669719(-) A-I      intronic chr11:107712167(-) A-I      intronic chr11:107712203(-) A-I      intronic chr11:107712207(-) A-I      intronic chr11:107712729(-) A-I      intronic chr11:107712730(-) A-I      intronic chr11:107712735(-) A-I      intronic chr11:107713188(-) A-I      intronic chr11:107713229(-) A-I      intronic chr11:107713378(-) A-I      intronic chr11:107713406(-) A-I      intronic chr11:107716225(-) A-I      intronic chr11:107721330(-) A-I      intronic chr11:107721331(-) A-I      intronic chr11:107721538(-) A-I      intronic chr11:107727203(-) A-I      intronic chr11:107781661(-) A-I      intronic chr11:107712206(-) A-I      intronic chr11:107663870(-) A-I      intronic chr11:107686110(-) A-I      intronic chr11:107687968(-) A-I      intronic chr11:107718004(-) A-I      intronic chr11:107694411(-) A-I      intronic chr11:107671751(-) A-I      intronic chr11:107682887(-) A-I      intronic chr11:107687988(-) A-I      intronic chr11:107669003(-) A-I      intronic chr11:107741191(-) A-I      intronic chr11:107667625(-) A-I      intronic chr11:107684483(-) A-I      intronic chr11:107712705(-) A-I      intronic chr11:107684529(-) A-I      intronic chr11:107694593(-) A-I      intronic chr11:107710540(-) A-I      intronic chr11:107697091(-) A-I      intronic chr11:107710065(-) A-I      intronic chr11:107671418(-) A-I      intronic chr11:107694591(-) A-I      intronic chr11:107709543(-) A-I      intronic chr11:107696246(-) A-I      intronic chr11:107690799(-) A-I      intronic chr11:107680276(-) A-I      intronic chr11:107717883(-) A-I      intronic chr11:107662688(-) A-I      3'UTR chr11:107662480(-) A-I      3'UTR chr11:107662593(-) A-I      3'UTR chr11:107710062(-) A-I      intronic chr11:107670522(-) A-I      intronic chr11:107670753(-) A-I      intronic chr11:107687919(-) A-I      intronic chr11:107678094(-) A-I      intronic chr11:107680282(-) A-I      intronic chr11:107745328(-) A-I      intronic chr11:107713337(-) A-I      intronic chr11:107713218(-) A-I      intronic chr11:107670419(-) A-I      intronic chr11:107702224(-) A-I      intronic chr11:107688528(-) A-I      intronic chr11:107684088(-) A-I      intronic chr11:107671914(-) A-I      intronic chr11:107713384(-) A-I      intronic chr11:107713402(-) A-I      intronic chr11:107671699(-) A-I      intronic chr11:107687091(-) A-I      intronic chr11:107667680(-) A-I      intronic chr11:107667492(-) A-I      intronic chr11:107704083(-) A-I      intronic chr11:107684610(-) A-I      intronic chr11:107699108(-) A-I      intronic chr11:107700736(-) A-I      intronic chr11:107690905(-) A-I      intronic chr11:107678568(-) A-I      intronic chr11:107678596(-) A-I      intronic chr11:107671508(-) A-I      intronic chr11:107678437(-) A-I      intronic chr11:107665055(-) A-I      intronic chr11:107684049(-) A-I      intronic chr11:107666697(-) A-I      intronic chr11:107712748(-) A-I      intronic chr11:107683162(-) A-I      intronic chr11:107684651(-) A-I      intronic chr11:107710491(-) A-I      intronic chr11:107667563(-) A-I      intronic chr11:107667671(-) A-I      intronic chr11:107700061(-) A-I      intronic chr11:107690860(-) A-I      intronic chr11:107668851(-) A-I      intronic chr11:107668211(-) A-I      intronic chr11:107671406(-) A-I      intronic chr11:107663811(-) A-I      intronic chr11:107686227(-) A-I      intronic chr11:107668222(-) A-I      intronic chr11:107677910(-) A-I      intronic chr11:107720289(-) A-I      intronic chr11:107687747(-) A-I      intronic chr11:107666772(-) A-I      intronic chr11:107696200(-) A-I      intronic chr11:107678144(-) A-I      intronic chr11:107669557(-) A-I      intronic chr11:107696213(-) A-I      intronic chr11:107663875(-) A-I      intronic chr11:107716567(-) A-I      intronic chr11:107684573(-) A-I      intronic chr11:107710658(-) A-I      intronic chr11:107668179(-) A-I      intronic chr11:107686208(-) A-I      intronic chr11:107684568(-) A-I      intronic chr11:107796254(-) A-I      intronic chr11:107668196(-) A-I      intronic chr11:107702085(-) A-I      intronic chr11:107678397(-) A-I      intronic chr11:107710452(-) A-I      intronic chr11:107671859(-) A-I      intronic chr11:107710586(-) A-I      intronic chr11:107712199(-) A-I      intronic chr11:107687256(-) A-I      intronic chr11:107717909(-) A-I      intronic chr11:107710544(-) A-I      intronic chr11:107712202(-) A-I      intronic chr11:107668167(-) A-I      intronic chr11:107713217(-) A-I      intronic chr11:107788892(-) A-I      intronic chr11:107664985(-) A-I      intronic chr11:107668838(-) A-I      intronic chr11:107685704(-) A-I      intronic chr11:107669796(-) A-I      intronic chr11:107685468(-) A-I      intronic chr11:107712740(-) A-I      intronic chr11:107712745(-) A-I      intronic chr11:107688601(-) A-I      intronic chr11:107733008(-) A-I      intronic chr11:107678123(-) A-I      intronic chr11:107741206(-) A-I      intronic chr11:107712807(-) A-I      intronic chr11:107694543(-) A-I      intronic chr11:107684555(-) A-I      intronic chr11:107694592(-) A-I      intronic chr11:107682774(-) A-I      intronic chr11:107789478(-) A-I      intronic chr11:107669750(-) A-I      intronic chr11:107665091(-) A-I      intronic chr11:107686161(-) A-I      intronic chr11:107687122(-) A-I      intronic chr11:107686201(-) A-I      intronic chr11:107709147(-) A-I      intronic chr11:107687819(-) A-I      intronic chr11:107671484(-) A-I      intronic chr11:107685471(-) A-I      intronic chr11:107688739(-) A-I      intronic chr11:107696235(-) A-I      intronic chr11:107702226(-) A-I      intronic chr11:107703358(-) A-I      intronic chr11:107713142(-) A-I      intronic chr11:107717977(-) A-I      intronic chr11:107662492(-) A-I      3'UTR chr11:107662574(-) A-I      3'UTR chr11:107662667(-) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SLC35F2	chr11:107662492(-) A-G exon 3'UTR    22484847 chr11:107670522(-) A-G intron -    22484847 chr11:107676454(-) T-C intron -    22484847 chr11:107694543(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC35F2	chr11:107662963-107662964(-) m6A 3'UTR       24209618//27371828 chr11:107663026-107663027(-) m6A 3'UTR       24284625//24209618//24981863//27371828 chr11:107663044-107663045(-) m6A 3'UTR       24284625//24209618//24981863 chr11:107663085-107663086(-) m6A 3'UTR       24284625//24209618//24981863//22608085 chr11:107663121-107663122(-) m6A 3'UTR       24284625//24209618//24981863//22608085 chr11:107663153-107663154(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//22608085 chr11:107663191-107663192(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//22608085 chr11:107663198-107663199(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//22608085 chr11:107663246-107663247(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22575960//22608085 chr11:107663257-107663258(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22575960//22608085 chr11:107663276-107663277(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22575960//22608085 chr11:107663360-107663361(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr11:107663371-107663372(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773536//22575960//22608085 chr11:107729256-107729257(-) m6A 5'UTR//intron       - chr11:107729394-107729395(-) m6A CDS       24981863//27371828//27773536 chr11:107729482-107729483(-) m6A CDS       24981863//27371828//27773536 chr11:107729540-107729541(-) m6A 5'UTR       24981863//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART7-3p	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	SLC35F2	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART7-3p
Interactor2: SLC35F2

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	cRep//miRanda//PARalyzer//RNAHybrid//Targetscan
Support Database	RepTar//ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	RepTar//ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	Downregulation
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.