Detail Information

Basic Information:


  VIRBase ID:  

VHID00320895

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART7-3p:           RRM2B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART7-3p RRM2B
miRBase
Accession/Entrez ID		 MIMAT0003416 50484
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - MTDPS8A//MTDPS8B//P53R2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RRM2B
chr8:103221315(-) A-I      intronic
chr8:103221190(-) A-I      intronic
chr8:103221186(-) A-I      intronic
chr8:103246146(-) A-I      intronic
chr8:103246069(-) A-I      intronic
chr8:103242086(-) A-I      intronic
chr8:103221212(-) A-I      intronic
chr8:103221206(-) A-I      intronic
chr8:103234473(-) A-I      intronic
chr8:103221175(-) A-I      intronic
chr8:103221173(-) A-I      intronic
chr8:103221174(-) A-I      intronic
chr8:103242062(-) A-I      intronic
chr8:103242055(-) A-I      intronic
chr8:103242007(-) A-I      intronic
chr8:103241984(-) A-I      intronic
chr8:103238994(-) A-I      intronic
chr8:103238999(-) A-I      intronic
chr8:103234504(-) A-I      intronic
chr8:103241419(-) A-I      intronic
chr8:103221256(-) A-I      intronic
chr8:103232840(-) A-I      intronic
chr8:103232909(-) A-I      intronic
chr8:103234417(-) A-I      intronic
chr8:103246177(-) A-I      intronic
chr8:103246189(-) A-I      intronic
chr8:103246237(-) A-I      intronic
chr8:103247887(-) A-I      intronic
chr8:103247929(-) A-I      intronic
chr8:103239004(-) A-I      intronic
chr8:103239009(-) A-I      intronic
chr8:103234500(-) A-I      intronic
chr8:103239070(-) A-I      intronic
chr8:103239080(-) A-I      intronic
chr8:103241333(-) A-I      intronic
chr8:103232823(-) A-I      intronic
chr8:103232367(-) A-I      intronic
chr8:103241373(-) A-I      intronic
chr8:103236603(-) A-I      intronic
chr8:103232345(-) A-I      intronic
chr8:103221339(-) A-I      intronic
chr8:103221292(-) A-I      intronic
chr8:103232262(-) A-I      intronic
chr8:103246070(-) A-I      intronic
chr8:103232222(-) A-I      intronic
chr8:103232875(-) A-I      intronic
chr8:103223378(-) A-I      intronic
chr8:103241227(-) A-I      intronic
chr8:103232384(-) A-I      intronic
chr8:103232332(-) A-I      intronic
chr8:103232783(-) A-I      intronic
chr8:103242009(-) A-I      intronic
chr8:103246209(-) A-I      intronic
chr8:103232319(-) A-I      intronic
chr8:103241381(-) A-I      intronic
chr8:103232452(-) A-I      intronic
chr8:103242085(-) A-I      intronic
chr8:103223342(-) A-I      intronic
chr8:103234468(-) A-I      intronic
chr8:103232301(-) A-I      intronic
chr8:103241875(-) A-I      intronic
chr8:103244066(-) A-I      intronic
chr8:103234508(-) A-I      intronic
chr8:103234537(-) A-I      intronic
chr8:103241442(-) A-I      intronic
chr8:103232284(-) A-I      intronic
chr8:103235724(-) A-I      intronic
chr8:103234464(-) A-I      intronic
chr8:103232831(-) A-I      intronic
chr8:103246218(-) A-I      intronic
chr8:103248056(-) A-I      intronic
chr8:103241302(-) A-I      intronic
chr8:103232323(-) A-I      intronic
chr8:103246226(-) A-I      intronic
chr8:103241995(-) A-I      intronic
chr8:103232318(-) A-I      intronic
chr8:103235823(-) A-I      intronic
chr8:103242092(-) A-I      intronic
chr8:103232883(-) A-I      intronic
chr8:103234402(-) A-I      intronic
chr8:103234475(-) A-I      intronic
chr8:103246224(-) A-I      intronic
chr8:103232827(-) A-I      intronic
chr8:103234401(-) A-I      intronic
chr8:103241325(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RRM2B
chr8:103232301(-) A-G intron -    22484847
chr8:103232323(-) A-G intron -    22484847
chr8:103232332(-) A-G intron -    22484847
chr8:103232783(-) A-G intron -    22484847
chr8:103232827(-) A-G intron -    22484847
chr8:103232936(-) A-G intron -    22484847
chr8:103235724(-) A-G intron -    22484847
chr8:103235823(-) A-G intron -    22484847
chr8:103239303(-) A-G intron -    22484847
chr8:103241258(-) A-G intron -    22484847
chr8:103241302(-) A-G intron -    22484847
chr8:103241325(-) A-G intron -    22484847
chr8:103241337(-) A-G intron -    22484847
chr8:103241381(-) A-G intron -    22484847
chr8:103241442(-) A-G intron -    22484847
chr8:103241875(-) A-G intron -    22484847
chr8:103241995(-) A-G intron -    22484847
chr8:103242009(-) A-G intron -    22484847
chr8:103242085(-) A-G intron -    22484847
chr8:103242092(-) A-G intron -    22484847
chr8:103244008(-) T-C intron -    22484847
chr8:103244066(-) A-G intron -    22484847
chr8:103246070(-) A-G intron -    22484847
chr8:103246209(-) A-G intron -    22484847
chr8:103246218(-) A-G intron -    22484847
chr8:103246224(-) A-G intron -    22484847
chr8:103246225(-) A-G intron -    22484847
chr8:103246226(-) A-G intron -    22484847
chr8:103246270(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RRM2B
chr8:103217553-103217554(-) Y 3'UTR       25219674
chr8:103220263-103220264(-) m6A 3'UTR//exon       24981863//22608085
chr8:103220332-103220333(-) m6A 3'UTR//exon       24981863//26404942//22608085
chr8:103220341-103220342(-) m6A 3'UTR//exon       24981863//26404942//22608085
chr8:103220356-103220357(-) m6A 3'UTR//exon       24981863//22608085
chr8:103250951-103250952(-) m6A 5'UTR//CDS//exon//intron       24981863
chr8:103250985-103250986(-) m6A 5'UTR//CDS//exon//intron       24981863
chr8:103251183-103251184(-) m6A 5'UTR       25456834//24981863//27371828
chr8:103251191-103251192(-) m6A 5'UTR       25456834//24981863//27371828
chr8:103251200-103251201(-) m6A 5'UTR       25456834//24981863//27371828
chr8:103251253-103251254(-) m6A 5'UTR       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BART7-3p
Exosome Jurkat-derived T cell line (J77cl20)     21505438
RRM2B
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART7-3p
Interactor2: RRM2B

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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