Detail Information

Basic Information:


  VIRBase ID:  

VHID00320249

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART7-3p:           CGGBP1:      

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Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART7-3p CGGBP1
miRBase
Accession/Entrez ID		 MIMAT0003416 8545
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - CGGBP//p20-CGGBP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CGGBP1
chr3:88165454(-) A-I      intronic
chr3:88138397(-) A-I      intronic
chr3:88138385(-) A-I      intronic
chr3:88138457(-) A-I      intronic
chr3:88138468(-) A-I      intronic
chr3:88138474(-) A-I      intronic
chr3:88138529(-) A-I      intronic
chr3:88138533(-) A-I      intronic
chr3:88138602(-) A-I      intronic
chr3:88138610(-) A-I      intronic
chr3:88155523(-) A-I      intronic
chr3:88155603(-) A-I      intronic
chr3:88155616(-) A-I      intronic
chr3:88165508(-) A-I      intronic
chr3:88165542(-) A-I      intronic
chr3:88138196(-) A-I      intronic
chr3:88138111(-) A-I      intronic
chr3:88138165(-) A-I      intronic
chr3:88171997(-) A-I      intronic
chr3:88137969(-) A-I      intronic
chr3:88172077(-) A-I      intronic
chr3:88172121(-) A-I      intronic
chr3:88137970(-) A-I      intronic
chr3:88138209(-) A-I      intronic
chr3:88154207(-) A-I      intronic
chr3:88138087(-) A-I      intronic
chr3:88138079(-) A-I      intronic
chr3:88137965(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CGGBP1
chr3:88152257(-) A-I intron -    22327324
chr3:88197908(-) T-C intron -    22484847
chr3:88197919(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CGGBP1
chr3:88104100-88104101(-) m6A 3'UTR       24981863
chr3:88104149-88104150(-) m6A 3'UTR       24981863//22608085
chr3:88104253-88104254(-) m6A 3'UTR       24981863
chr3:88104695-88104696(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr3:88104809-88104810(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr3:88104834-88104835(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr3:88104930-88104931(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr3:88105006-88105007(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr3:88105077-88105078(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//22608085
chr3:88105088-88105089(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//22608085
chr3:88105147-88105148(-) m6A 5'UTR       24284625//24209618//24981863//26404942//22608085
chr3:88105191-88105192(-) m6A 5'UTR//intron       24284625//22608085
chr3:88107147-88107148(-) m6A exon//intron       27773535
chr3:88107155-88107156(-) m6A exon//intron       27773535
chr3:88107163-88107164(-) m6A exon//intron       27773535
chr3:88107176-88107177(-) m6A 5'UTR//exon//intron       27773535
chr3:88107183-88107184(-) m6A 5'UTR//exon//intron       27773535
chr3:88107215-88107216(-) m6A 5'UTR//exon//intron       27773535
chr3:88107264-88107265(-) m6A 5'UTR//exon//intron       27773535
chr3:88107292-88107293(-) m6A 5'UTR//exon//intron       27773535
chr3:88107321-88107322(-) m6A 5'UTR//exon//intron       27773535
chr3:88108120-88108121(-) m6A 5'UTR//intron       24981863
chr3:88190203-88190204(-) m6A 5'UTR       -
chr3:88190210-88190211(-) m6A 5'UTR       -
chr3:88198937-88198938(-) m6A 5'UTR       24981863//22608085
chr3:88198943-88198944(-) m6A 5'UTR       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BART7-3p
Exosome Jurkat-derived T cell line (J77cl20)     21505438
CGGBP1
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART7-3p
Interactor2: CGGBP1

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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