Basic Information:

  VIRBase ID:  

VHID00319094

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART6-3p:  MIMAT0003415          SHPRH:  NM_173082     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART6-3p	SHPRH
miRBase Accession/Entrez ID	MIMAT0003415	257218
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	bA545I5.2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SHPRH	chr6:146197469(-) A-I      intronic chr6:146255623(-) A-I      intronic chr6:146208704(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SHPRH	chr6:146226975-146226976(-) m6A 3'UTR//intron       27773535 chr6:146226994-146226995(-) m6A 3'UTR//intron       27773535 chr6:146227016-146227017(-) m6A 3'UTR//intron       27773535 chr6:146227096-146227097(-) m6A 3'UTR//intron       27773535 chr6:146227180-146227181(-) m6A 3'UTR//intron       27773535 chr6:146227233-146227234(-) m6A 3'UTR//intron       27773535 chr6:146227247-146227248(-) m6A 3'UTR//intron       27773535 chr6:146227261-146227262(-) m6A 3'UTR//intron       27773535 chr6:146227418-146227419(-) m6A 3'UTR//intron       27773535 chr6:146227448-146227449(-) m6A 3'UTR//intron       27773535 chr6:146227456-146227457(-) m6A 3'UTR//intron       27773535 chr6:146227530-146227531(-) m6A 3'UTR//intron       27773535 chr6:146227986-146227987(-) m6A 3'UTR//intron       27773535 chr6:146228021-146228022(-) m6A 3'UTR//intron       27773535 chr6:146228051-146228052(-) m6A 3'UTR//intron       27773535 chr6:146228085-146228086(-) m6A 3'UTR//intron       27773535 chr6:146228419-146228420(-) m6A 3'UTR//intron       27773535 chr6:146228534-146228535(-) m6A 3'UTR//intron       27773535 chr6:146228548-146228549(-) m6A 3'UTR//intron       27773535 chr6:146228655-146228656(-) m6A 3'UTR//intron       27773535 chr6:146228679-146228680(-) m6A 3'UTR//intron       27773535 chr6:146228692-146228693(-) m6A 3'UTR//intron       27773535//22608085 chr6:146228757-146228758(-) m6A 3'UTR//intron       27773535//22608085 chr6:146228763-146228764(-) m6A 3'UTR//intron       27773535//22608085 chr6:146228797-146228798(-) m6A 3'UTR//intron       27773535 chr6:146228812-146228813(-) m6A 3'UTR//intron       27773535 chr6:146229011-146229012(-) m6A 3'UTR//intron       27773535 chr6:146229041-146229042(-) m6A 3'UTR//intron       27773535 chr6:146229089-146229090(-) m6A 3'UTR//intron       25456834//27773535//22608085 chr6:146229103-146229104(-) m6A 3'UTR//intron       25456834//27773535//22608085 chr6:146229111-146229112(-) m6A 3'UTR//intron       25456834//27773535//22608085 chr6:146229120-146229121(-) m6A 3'UTR//intron       25456834//27773535//22608085 chr6:146229155-146229156(-) m6A 3'UTR//intron       25456834//27773535//22608085 chr6:146229162-146229163(-) m6A 3'UTR//intron       27773535//22608085 chr6:146229174-146229175(-) m6A 3'UTR//intron       27773535//22608085 chr6:146229209-146229210(-) m6A 3'UTR//intron       27773535//22608085 chr6:146229292-146229293(-) m6A 3'UTR//intron       27773535//22608085 chr6:146229319-146229320(-) m6A 3'UTR//intron       27773535//22608085 chr6:146229373-146229374(-) m6A 3'UTR//intron       27773535//22608085 chr6:146229433-146229434(-) m6A 3'UTR//intron       27773535//22608085 chr6:146229449-146229450(-) m6A 3'UTR//intron       27773535//22608085 chr6:146229479-146229480(-) m6A 3'UTR//intron       27773535//22608085 chr6:146229565-146229566(-) m6A 3'UTR//intron       27773535//22608085 chr6:146229623-146229624(-) m6A 3'UTR//intron       27773535//22608085 chr6:146229670-146229671(-) m6A 3'UTR//intron       27773535 chr6:146229710-146229711(-) m6A 3'UTR//intron       27773535 chr6:146229716-146229717(-) m6A 3'UTR//intron       27773535 chr6:146229723-146229724(-) m6A 3'UTR//intron       27773535 chr6:146229743-146229744(-) m6A 3'UTR//intron       27773535 chr6:146229762-146229763(-) m6A 3'UTR//intron       27773535 chr6:146229847-146229848(-) m6A 3'UTR//intron       27773535//22608085 chr6:146229951-146229952(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr6:146229957-146229958(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr6:146229990-146229991(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr6:146230012-146230013(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr6:146230019-146230020(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr6:146230032-146230033(-) m6A 3'UTR//intron       24284625//27773535//22608085 chr6:146230080-146230081(-) m6A 3'UTR//intron       24284625//27773535//22608085 chr6:146230085-146230086(-) m6A 3'UTR//intron       24284625//27773535//22608085 chr6:146230091-146230092(-) m6A 3'UTR//intron       27773535//22608085 chr6:146230113-146230114(-) m6A 3'UTR//intron       27773535//22608085 chr6:146230159-146230160(-) m6A 3'UTR//intron       27773535//22608085 chr6:146230170-146230171(-) m6A 3'UTR//intron       27773535//22608085 chr6:146230213-146230214(-) m6A 3'UTR//intron       27773535//22608085 chr6:146230219-146230220(-) m6A 3'UTR//intron       27773535//22608085 chr6:146230245-146230246(-) m6A 3'UTR//intron       27773535 chr6:146230261-146230262(-) m6A 3'UTR//intron       27773535 chr6:146230289-146230290(-) m6A 3'UTR//intron       27773535 chr6:146230323-146230324(-) m6A 3'UTR//intron       27773535 chr6:146230433-146230434(-) m6A 3'UTR//intron       27773535 chr6:146230455-146230456(-) m6A 3'UTR//intron       27773535 chr6:146230494-146230495(-) m6A 3'UTR//intron       27773535 chr6:146230551-146230552(-) m6A 3'UTR//intron       27773535 chr6:146238707-146238708(-) m6A 3'UTR//intron       27773535 chr6:146238786-146238787(-) m6A 3'UTR//intron       27773535 chr6:146264521-146264522(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr6:146264624-146264625(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22608085 chr6:146264631-146264632(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22608085 chr6:146264638-146264639(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22608085 chr6:146264855-146264856(-) m6A 3'UTR//CDS       24981863//27773535//22608085 chr6:146264882-146264883(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr6:146264888-146264889(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr6:146264904-146264905(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr6:146266527-146266528(-) m6A 3'UTR//CDS       24981863//27773535//22608085 chr6:146266575-146266576(-) m6A 3'UTR//CDS       24981863//27773535//22608085 chr6:146266603-146266604(-) m6A 3'UTR//CDS       27773535//22608085 chr6:146266658-146266659(-) m6A 3'UTR//CDS       27773535//22608085 chr6:146275849-146275850(-) m6A CDS       24981863//27773535 chr6:146275861-146275862(-) m6A CDS       24981863//27773535 chr6:146275960-146275961(-) m6A CDS       27773535 chr6:146275972-146275973(-) m6A CDS       27773535 chr6:146276196-146276197(-) m6A CDS//intron       24981863 chr6:146276215-146276216(-) m6A CDS//intron       24981863 chr6:146276362-146276363(-) m6A CDS       24981863//27773535//22608085 chr6:146276375-146276376(-) m6A CDS       27773535//22608085 chr6:146276465-146276466(-) m6A 5'UTR       27773535 chr6:146284905-146284906(-) m6A 5'UTR//intron       27773535 chr6:146285103-146285104(-) m6A 5'UTR//intron       25456834//27371828//22608085 chr6:146285110-146285111(-) m6A 5'UTR//intron       25456834//27371828//22608085 chr6:146285118-146285119(-) m6A 5'UTR//intron       25456834//27371828//22608085 chr6:146285438-146285439(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SHPRH	Chromatin K562 cells     - Cytosol HeLa-S3 cells|K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART6-3p
Interactor2: SHPRH

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg