Basic Information:

  VIRBase ID:  

VHID00318852

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART6-3p:  MIMAT0003415          SRXN1:  NM_080725     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART6-3p	SRXN1
miRBase Accession/Entrez ID	MIMAT0003415	140809
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C20orf139//Npn3//SRX//SRX1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SRXN1	chr20:627338-627339(-) m6A 3'UTR       24209618//24981863//26404942//22608085 chr20:627478-627479(-) m6A 3'UTR       24284625//24981863//26404942//22608085 chr20:627483-627484(-) m6A 3'UTR       24284625//24981863//26404942//22608085 chr20:627489-627490(-) m6A 3'UTR       24284625//24981863//26404942//22608085 chr20:627607-627608(-) m6A 3'UTR       24284625//26404942//27773535 chr20:627659-627660(-) m6A 3'UTR       26404942//27773535 chr20:627700-627701(-) m6A 3'UTR       26404942 chr20:627724-627725(-) m6A 3'UTR       26404942 chr20:627747-627748(-) m6A 3'UTR       26404942 chr20:627808-627809(-) m6A 3'UTR       24284625//26404942 chr20:627878-627879(-) m6A 3'UTR       24284625//26404942 chr20:628016-628017(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:628042-628043(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:628115-628116(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:628121-628122(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:628127-628128(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:628150-628151(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:628435-628436(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr20:628450-628451(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr20:628461-628462(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:628527-628528(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:628553-628554(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:628577-628578(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:628600-628601(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:628610-628611(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:628621-628622(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:628717-628718(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:628744-628745(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:628753-628754(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:628967-628968(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr20:628988-628989(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr20:629015-629016(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:629059-629060(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr20:629109-629110(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr20:629196-629197(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr20:629314-629315(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr20:629367-629368(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:629400-629401(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:629437-629438(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:629550-629551(-) m6A CDS       24284625//24209618//27773535//27371828//27773536//22575960 chr20:629556-629557(-) m6A CDS       24284625//24209618//27773535//27371828//27773536//22575960 chr20:633629-633630(-) m6A CDS       24284625//24209618//27773535//27773536//22575960 chr20:633656-633657(-) m6A CDS       24284625//24209618//27773535//27773536//22575960 chr20:633958-633959(-) m6A 5'UTR       24981863//27773536 chr20:633977-633978(-) m6A 5'UTR       24981863//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SRXN1	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART6-3p
Interactor2: SRXN1

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg