Basic Information:

  VIRBase ID:  

VHID00317079

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART6-3p:  MIMAT0003415          CLOCK:  NM_004898     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART6-3p	CLOCK
miRBase Accession/Entrez ID	MIMAT0003415	9575
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	bHLHe8//KAT13D

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CLOCK	chr4:56405658(-) A-I      intronic chr4:56405617(-) A-I      intronic chr4:56405290(-) A-I      intronic chr4:56405204(-) A-I      intronic chr4:56405195(-) A-I      intronic chr4:56405182(-) A-I      intronic chr4:56395485(-) A-I      intronic chr4:56405181(-) A-I      intronic chr4:56403725(-) A-I      intronic chr4:56396830(-) A-I      intronic chr4:56394405(-) A-I      intronic chr4:56394430(-) A-I      intronic chr4:56395437(-) A-I      intronic chr4:56313164(-) A-I      intronic chr4:56313163(-) A-I      intronic chr4:56313133(-) A-I      intronic chr4:56313127(-) A-I      intronic chr4:56313117(-) A-I      intronic chr4:56405683(-) A-I      intronic chr4:56323066(-) A-I      intronic chr4:56323031(-) A-I      intronic chr4:56405672(-) A-I      intronic chr4:56346588(-) A-I      intronic chr4:56313517(-) A-I      intronic chr4:56405671(-) A-I      intronic chr4:56394329(-) A-I      intronic chr4:56394152(-) A-I      intronic chr4:56394147(-) A-I      intronic chr4:56394056(-) A-I      intronic chr4:56394027(-) A-I      intronic chr4:56405340(-) A-I      intronic chr4:56332007(-) A-I      intronic chr4:56313474(-) A-I      intronic chr4:56313449(-) A-I      intronic chr4:56312334(-) A-I      intronic chr4:56312272(-) A-I      intronic chr4:56391770(-) A-I      intronic chr4:56387631(-) A-I      intronic chr4:56387550(-) A-I      intronic chr4:56387546(-) A-I      intronic chr4:56395577(-) A-I      intronic chr4:56387539(-) A-I      intronic chr4:56385496(-) A-I      intronic chr4:56385470(-) A-I      intronic chr4:56385373(-) A-I      intronic chr4:56374875(-) A-I      intronic chr4:56374869(-) A-I      intronic chr4:56373776(-) A-I      intronic chr4:56373770(-) A-I      intronic chr4:56396770(-) A-I      intronic chr4:56396739(-) A-I      intronic chr4:56373370(-) A-I      intronic chr4:56405629(-) A-I      intronic chr4:56405613(-) A-I      intronic chr4:56405304(-) A-I      intronic chr4:56373365(-) A-I      intronic chr4:56405274(-) A-I      intronic chr4:56405258(-) A-I      intronic chr4:56396738(-) A-I      intronic chr4:56396725(-) A-I      intronic chr4:56396724(-) A-I      intronic chr4:56396685(-) A-I      intronic chr4:56396737(-) A-I      intronic chr4:56395490(-) A-I      intronic chr4:56395558(-) A-I      intronic chr4:56373338(-) A-I      intronic chr4:56373301(-) A-I      intronic chr4:56372924(-) A-I      intronic chr4:56372923(-) A-I      intronic chr4:56372488(-) A-I      intronic chr4:56372478(-) A-I      intronic chr4:56372457(-) A-I      intronic chr4:56372452(-) A-I      intronic chr4:56371809(-) A-I      intronic chr4:56371785(-) A-I      intronic chr4:56371779(-) A-I      intronic chr4:56371660(-) A-I      intronic chr4:56371639(-) A-I      intronic chr4:56371612(-) A-I      intronic chr4:56371572(-) A-I      intronic chr4:56347001(-) A-I      intronic chr4:56346971(-) A-I      intronic chr4:56346877(-) A-I      intronic chr4:56346865(-) A-I      intronic chr4:56346792(-) A-I      intronic chr4:56346679(-) A-I      intronic chr4:56346651(-) A-I      intronic chr4:56346629(-) A-I      intronic chr4:56346621(-) A-I      intronic chr4:56312336(-) A-I      intronic chr4:56346560(-) A-I      intronic chr4:56346461(-) A-I      intronic chr4:56331987(-) A-I      intronic chr4:56331971(-) A-I      intronic chr4:56331893(-) A-I      intronic chr4:56324514(-) A-I      intronic chr4:56323025(-) A-I      intronic chr4:56323023(-) A-I      intronic chr4:56323019(-) A-I      intronic chr4:56313412(-) A-I      intronic chr4:56313362(-) A-I      intronic chr4:56313275(-) A-I      intronic chr4:56312384(-) A-I      intronic chr4:56312321(-) A-I      intronic chr4:56311982(-) A-I      intronic chr4:56311841(-) A-I      intronic chr4:56406339(-) A-I      intronic chr4:56395509(-) A-I      intronic chr4:56387603(-) A-I      intronic chr4:56387558(-) A-I      intronic chr4:56395454(-) A-I      intronic chr4:56387554(-) A-I      intronic chr4:56323089(-) A-I      intronic chr4:56323079(-) A-I      intronic chr4:56323074(-) A-I      intronic chr4:56406312(-) A-I      intronic chr4:56406291(-) A-I      intronic chr4:56395578(-) A-I      intronic chr4:56406267(-) A-I      intronic chr4:56311854(-) A-I      intronic chr4:56391530(-) A-I      intronic chr4:56401271(-) A-I      intronic chr4:56373263(-) A-I      intronic chr4:56391766(-) A-I      intronic chr4:56385402(-) A-I      intronic chr4:56408381(-) A-I      intronic chr4:56396779(-) A-I      intronic chr4:56346712(-) A-I      intronic chr4:56331946(-) A-I      intronic chr4:56395363(-) A-I      intronic chr4:56322660(-) A-I      intronic chr4:56396860(-) A-I      intronic chr4:56391396(-) A-I      intronic chr4:56395360(-) A-I      intronic chr4:56401260(-) A-I      intronic chr4:56311896(-) A-I      intronic chr4:56396750(-) A-I      intronic chr4:56335390(-) A-I      intronic chr4:56312459(-) A-I      intronic chr4:56399987(-) A-I      intronic chr4:56323046(-) A-I      intronic chr4:56336024(-) A-I      intronic chr4:56311962(-) A-I      intronic chr4:56312399(-) A-I      intronic chr4:56366686(-) A-I      intronic chr4:56405194(-) A-I      intronic chr4:56395441(-) A-I      intronic chr4:56312009(-) A-I      intronic chr4:56392859(-) A-I      intronic chr4:56346592(-) A-I      intronic chr4:56312036(-) A-I      intronic chr4:56409244(-) A-I      intronic chr4:56391737(-) A-I      intronic chr4:56334385(-) A-I      intronic chr4:56395515(-) A-I      intronic chr4:56391526(-) A-I      intronic chr4:56312323(-) A-I      intronic chr4:56346542(-) A-I      intronic chr4:56394037(-) A-I      intronic chr4:56406212(-) A-I      intronic chr4:56409869(-) A-I      intronic chr4:56409183(-) A-I      intronic chr4:56391435(-) A-I      intronic chr4:56398886(-) A-I      intronic chr4:56395535(-) A-I      intronic chr4:56313485(-) A-I      intronic chr4:56391874(-) A-I      intronic chr4:56312455(-) A-I      intronic chr4:56336040(-) A-I      intronic chr4:56387604(-) A-I      intronic chr4:56395466(-) A-I      intronic chr4:56346869(-) A-I      intronic chr4:56408291(-) A-I      intronic chr4:56374898(-) A-I      intronic chr4:56391707(-) A-I      intronic chr4:56322729(-) A-I      intronic chr4:56398813(-) A-I      intronic chr4:56399994(-) A-I      intronic chr4:56395428(-) A-I      intronic chr4:56406378(-) A-I      intronic chr4:56367086(-) A-I      intronic chr4:56312464(-) A-I      intronic chr4:56385357(-) A-I      intronic chr4:56396841(-) A-I      intronic chr4:56395433(-) A-I      intronic chr4:56373224(-) A-I      intronic chr4:56396895(-) A-I      intronic chr4:56373360(-) A-I      intronic chr4:56371586(-) A-I      intronic chr4:56405511(-) A-I      intronic chr4:56374807(-) A-I      intronic chr4:56312444(-) A-I      intronic chr4:56312393(-) A-I      intronic chr4:56346692(-) A-I      intronic chr4:56409240(-) A-I      intronic chr4:56401193(-) A-I      intronic chr4:56395497(-) A-I      intronic chr4:56331902(-) A-I      intronic chr4:56405641(-) A-I      intronic chr4:56322986(-) A-I      intronic chr4:56375023(-) A-I      intronic chr4:56346652(-) A-I      intronic chr4:56322560(-) A-I      intronic chr4:56373774(-) A-I      intronic chr4:56346459(-) A-I      intronic chr4:56395464(-) A-I      intronic chr4:56311818(-) A-I      intronic chr4:56385479(-) A-I      intronic chr4:56373423(-) A-I      intronic chr4:56313331(-) A-I      intronic chr4:56313468(-) A-I      intronic chr4:56401268(-) A-I      intronic chr4:56373679(-) A-I      intronic chr4:56405619(-) A-I      intronic chr4:56313422(-) A-I      intronic chr4:56311886(-) A-I      intronic chr4:56405350(-) A-I      intronic chr4:56387589(-) A-I      intronic chr4:56312333(-) A-I      intronic chr4:56403866(-) A-I      intronic chr4:56346564(-) A-I      intronic chr4:56385922(-) A-I      intronic chr4:56396754(-) A-I      intronic chr4:56398932(-) A-I      intronic chr4:56409202(-) A-I      intronic chr4:56372790(-) A-I      intronic chr4:56312382(-) A-I      intronic chr4:56373246(-) A-I      intronic chr4:56387586(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CLOCK	chr4:56309656(-) C-T intron -    22484847 chr4:56309657(-) T-C intron -    22484847 chr4:56312438(-) T-C intron -    22484847 chr4:56312453(-) T-C intron -    22484847 chr4:56312455(-) A-G intron -    22484847 chr4:56312464(-) A-G intron -    22484847 chr4:56312495(-) T-C intron -    22484847 chr4:56313331(-) A-G intron -    22484847 chr4:56324352(-) A-G intron -    22484847 chr4:56324425(-) A-G intron -    22484847 chr4:56331931(-) A-G intron -    22484847 chr4:56332056(-) G-A intron -    22484847 chr4:56346489(-) A-G intron -    22484847 chr4:56346712(-) A-G intron -    22484847 chr4:56346869(-) A-G intron -    22484847 chr4:56347057(-) G-T intron -    22484847 chr4:56373360(-) A-G intron -    22484847 chr4:56373423(-) A-G intron -    22484847 chr4:56373679(-) A-G intron -    22484847 chr4:56374898(-) A-G intron -    22484847 chr4:56385342(-) A-G intron -    22484847 chr4:56385357(-) A-G intron -    22484847 chr4:56385479(-) A-G intron -    22484847 chr4:56385845(-) A-G intron -    22484847 chr4:56387523(-) A-G intron -    22484847 chr4:56391620(-) A-G intron -    22484847 chr4:56391635(-) A-G intron -    22484847 chr4:56391874(-) A-G intron -    22484847 chr4:56394123(-) A-G intron -    22484847 chr4:56395428(-) A-G intron -    22484847 chr4:56395433(-) A-G intron -    22484847 chr4:56395466(-) A-G intron -    22484847 chr4:56396841(-) A-G intron -    22484847 chr4:56399994(-) A-G intron -    22484847 chr4:56401978(-) A-G intron -    22484847 chr4:56403709(-) A-G intron -    22484847 chr4:56403866(-) A-G intron -    22484847 chr4:56405350(-) A-G intron -    22484847 chr4:56406454(-) A-G intron -    22484847 chr4:56408291(-) A-G intron -    22484847 chr4:56408381(-) A-G intron -    22484847 chr4:56409244(-) A-G intron -    22484847 chr4:56409284(-) A-G intron -    22484847 chr4:56409869(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CLOCK	chr4:56294236-56294237(-) m6A 3'UTR       27773535 chr4:56294297-56294298(-) m6A 3'UTR       27773535 chr4:56294303-56294304(-) m6A 3'UTR       27773535 chr4:56299078-56299079(-) m6A 3'UTR//exon       24981863 chr4:56299101-56299102(-) m6A 3'UTR//exon       24981863 chr4:56299787-56299788(-) m6A 3'UTR//exon       24981863 chr4:56300989-56300990(-) m6A 3'UTR//exon       27773535 chr4:56301086-56301087(-) m6A 3'UTR//exon       24981863//27773535//22608085 chr4:56301139-56301140(-) m6A 3'UTR//exon       24981863//27773535//22608085 chr4:56301151-56301152(-) m6A 3'UTR//exon       24981863//27773535//22608085 chr4:56301198-56301199(-) m6A 3'UTR//exon       24209618//24981863//27773535//22608085 chr4:56301622-56301623(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535 chr4:56304561-56304562(-) m6A CDS//exon       24284625//24209618//27773535 chr4:56308610-56308611(-) m6A CDS//exon       27773535 chr4:56308649-56308650(-) m6A CDS//exon       27773535 chr4:56308746-56308747(-) m6A CDS//exon       27773535 chr4:56308764-56308765(-) m6A CDS//exon       27773535 chr4:56309876-56309877(-) m6A CDS//exon       27773535 chr4:56309913-56309914(-) m6A CDS//exon       27773535 chr4:56316265-56316266(-) m6A CDS       27773535 chr4:56412673-56412674(-) m1A 5'UTR//exon//intron       26863196//26863410 chr4:56412693-56412694(-) m6A 5'UTR//exon//intron       25456834//24981863//27773536 chr4:56412733-56412734(-) m6A exon//intron       25456834//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CLOCK	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART6-3p
Interactor2: CLOCK

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	PARalyzer
Support Database	ViRBase//VIRmiRNA

References:

PMID	22100165	Target region	3'UTR
Source	ViRBase//VIRmiRNA	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.