Basic Information:

  VIRBase ID:  

VHID00315037

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART6-5p:  MIMAT0003414          FSD1L:  NM_031919     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART6-5p	FSD1L
miRBase Accession/Entrez ID	MIMAT0003414	83856
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CCDC10//CSDUFD1//FSD1CL//FSD1NL//MIR1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FSD1L	chr9:108213370(+) A-I      intronic chr9:108213500(+) A-I      intronic chr9:108213501(+) A-I      intronic chr9:108213514(+) A-I      intronic chr9:108224493(+) A-I      intronic chr9:108224518(+) A-I      intronic chr9:108224548(+) A-I      intronic chr9:108224667(+) A-I      intronic chr9:108224682(+) A-I      intronic chr9:108230893(+) A-I      intronic chr9:108261085(+) A-I      intronic chr9:108261077(+) A-I      intronic chr9:108224600(+) A-I      intronic chr9:108213358(+) A-I      intronic chr9:108224597(+) A-I      intronic chr9:108224596(+) A-I      intronic chr9:108224577(+) A-I      intronic chr9:108261115(+) A-I      intronic chr9:108225039(+) A-I      intronic chr9:108224702(+) A-I      intronic chr9:108265437(+) A-I      intronic chr9:108224685(+) A-I      intronic chr9:108225272(+) A-I      intronic chr9:108225038(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	FSD1L	chr9:108284664(+) A-I intron -    22327324 chr9:108296288(+) G-A intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FSD1L	chr9:108286524-108286525(+) m6A intron       - chr9:108286580-108286581(+) m6A intron       - chr9:108287183-108287184(+) m6A intron       24981863 chr9:108308652-108308653(+) m6A CDS       24981863 chr9:108308695-108308696(+) m6A CDS       24981863 chr9:108308744-108308745(+) m6A CDS       24981863 chr9:108308927-108308928(+) m6A 3'UTR       24981863 chr9:108308972-108308973(+) m6A 3'UTR       24981863 chr9:108309025-108309026(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FSD1L	Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART6-5p
Interactor2: FSD1L

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg