Basic Information:

  VIRBase ID:  

VHID00314829

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART6-5p:  MIMAT0003414          USP46:  NM_001286767     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART6-5p	USP46
miRBase Accession/Entrez ID	MIMAT0003414	64854
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	USP46	chr4:53472550(-) A-I      intronic chr4:53506806(-) A-I      intronic chr4:53506854(-) A-I      intronic chr4:53502810(-) A-I      intronic chr4:53502688(-) A-I      intronic chr4:53500780(-) A-I      intronic chr4:53500768(-) A-I      intronic chr4:53500759(-) A-I      intronic chr4:53482748(-) A-I      intronic chr4:53482735(-) A-I      intronic chr4:53472549(-) A-I      intronic chr4:53472517(-) A-I      intronic chr4:53472534(-) A-I      intronic chr4:53472548(-) A-I      intronic chr4:53503074(-) A-I      intronic chr4:53503061(-) A-I      intronic chr4:53502790(-) A-I      intronic chr4:53500441(-) A-I      intronic chr4:53502787(-) A-I      intronic chr4:53503178(-) A-I      intronic chr4:53500484(-) A-I      intronic chr4:53502761(-) A-I      intronic chr4:53505966(-) A-I      intronic chr4:53520771(-) A-I      intronic chr4:53506861(-) A-I      intronic chr4:53503147(-) A-I      intronic chr4:53506887(-) A-I      intronic chr4:53500864(-) A-I      intronic chr4:53503150(-) A-I      intronic chr4:53503015(-) A-I      intronic chr4:53503116(-) A-I      intronic chr4:53505992(-) A-I      intronic chr4:53503045(-) A-I      intronic chr4:53500455(-) A-I      intronic chr4:53503098(-) A-I      intronic chr4:53502773(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	USP46	chr4:53500864(-) A-G intron -    22484847 chr4:53502761(-) A-G intron -    22484847 chr4:53502787(-) A-G intron -    22484847 chr4:53502790(-) A-G intron -    22484847 chr4:53506861(-) A-G intron -    22484847 chr4:53506887(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	USP46	chr4:53457140-53457141(-) m6A 3'UTR       27773535 chr4:53457197-53457198(-) m6A 3'UTR       27773535 chr4:53457329-53457330(-) m6A 3'UTR       24209618//27773535//22608085 chr4:53457368-53457369(-) m6A 3'UTR       24209618//27773535//22608085 chr4:53457383-53457384(-) m6A 3'UTR       24209618//27773535//22608085 chr4:53457508-53457509(-) m6A 3'UTR       27773535 chr4:53457514-53457515(-) m6A 3'UTR       27773535 chr4:53461038-53461039(-) m6A 3'UTR       24981863//22608085 chr4:53461486-53461487(-) m6A 3'UTR       24981863 chr4:53462268-53462269(-) m6A 3'UTR       24981863 chr4:53462298-53462299(-) m6A 3'UTR       24981863//22608085 chr4:53462371-53462372(-) m6A 3'UTR       24981863//22608085 chr4:53462389-53462390(-) m6A 3'UTR       24981863//22608085 chr4:53462397-53462398(-) m6A 3'UTR       24981863//22608085 chr4:53462431-53462432(-) m6A 3'UTR       24981863//22608085 chr4:53462438-53462439(-) m6A 3'UTR       24981863//22608085 chr4:53463669-53463670(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22608085 chr4:53463788-53463789(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22608085 chr4:53463797-53463798(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	USP46	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART6-5p
Interactor2: USP46

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg