Basic Information:

  VIRBase ID:  

VHID00314353

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART6-5p:  MIMAT0003414          SEPSECS:  NM_016955     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART6-5p	SEPSECS
miRBase Accession/Entrez ID	MIMAT0003414	51091
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LP//PCH2D//SLA//SLA/LP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SEPSECS	chr4:25150920(-) A-I      intronic chr4:25150892(-) A-I      intronic chr4:25149863(-) A-I      intronic chr4:25150891(-) A-I      intronic chr4:25150912(-) A-I      intronic chr4:25159299(-) A-I      intronic chr4:25159331(-) A-I      intronic chr4:25159305(-) A-I      intronic chr4:25159295(-) A-I      intronic chr4:25150888(-) A-I      intronic chr4:25150804(-) A-I      intronic chr4:25150780(-) A-I      intronic chr4:25150777(-) A-I      intronic chr4:25150772(-) A-I      intronic chr4:25150737(-) A-I      intronic chr4:25149899(-) A-I      intronic chr4:25145850(-) A-I      intronic chr4:25122584(-) A-I      3'UTR chr4:25161231(-) A-I      intronic chr4:25150915(-) A-I      intronic chr4:25161176(-) A-I      intronic chr4:25161165(-) A-I      intronic chr4:25152604(-) A-I      intronic chr4:25149785(-) A-I      intronic chr4:25150818(-) A-I      intronic chr4:25150887(-) A-I      intronic chr4:25161391(-) A-I      intronic chr4:25161388(-) A-I      intronic chr4:25149718(-) A-I      intronic chr4:25149730(-) A-I      intronic chr4:25152542(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SEPSECS	chr4:25149785(-) A-G intron -    22484847 chr4:25150915(-) A-G intron -    22484847 chr4:25150961(-) A-G intron -    22484847 chr4:25152604(-) A-G intron -    22484847 chr4:25161109(-) C-G intron -    22484847 chr4:25161231(-) A-G intron -    22484847 chr4:25161388(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SEPSECS	chr4:25121696-25121697(-) m6A 3'UTR       27773535 chr4:25125375-25125376(-) m6A 3'UTR       27773535 chr4:25125412-25125413(-) m6A 3'UTR       27773535//22608085 chr4:25125424-25125425(-) m6A 3'UTR       27773535//22608085 chr4:25125476-25125477(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr4:25125597-25125598(-) m6A 3'UTR//CDS       24284625//24981863//27773535//27371828//22608085 chr4:25125632-25125633(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr4:25125699-25125700(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22608085 chr4:25125715-25125716(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22608085 chr4:25125821-25125822(-) m6A 3'UTR//CDS       24284625//27773535//22608085 chr4:25126924-25126925(-) m6A exon//intron       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SEPSECS	Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART6-5p
Interactor2: SEPSECS

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg