Basic Information:

  VIRBase ID:  

VHID00313951

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART6-5p:  MIMAT0003414          PGRMC1:  NM_001282621     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART6-5p	PGRMC1
miRBase Accession/Entrez ID	MIMAT0003414	10857
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Dap1//HPR6.6//IZA//MPR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PGRMC1	chrX:118370235-118370236(+) m6A 5'UTR       25456834//24981863 chrX:118370471-118370472(+) m6A CDS       22575960 chrX:118374396-118374397(+) m6A CDS//intron       26404942 chrX:118377135-118377136(+) m6A CDS       26404942//27773535 chrX:118377183-118377184(+) m6A CDS       26404942 chrX:118377499-118377500(+) Y 3'UTR       25219674 chrX:118377691-118377692(+) m6A 3'UTR       26404942 chrX:118377739-118377740(+) m6A 3'UTR       26404942 chrX:118377781-118377782(+) m6A 3'UTR       26404942//27773535 chrX:118377810-118377811(+) m6A 3'UTR       26404942//27773535 chrX:118377818-118377819(+) m6A 3'UTR       26404942//27773535 chrX:118377830-118377831(+) m6A 3'UTR       26404942//27773535 chrX:118377868-118377869(+) m6A 3'UTR       26404942//27773535 chrX:118377914-118377915(+) m6A 3'UTR       26404942//27773535 chrX:118377941-118377942(+) m6A 3'UTR       26404942//27773535 chrX:118378031-118378032(+) m6A 3'UTR       26404942 chrX:118378253-118378254(+) m6A 3'UTR       27773535 chrX:118378288-118378289(+) m6A 3'UTR       27773535 chrX:118378307-118378308(+) m6A 3'UTR       27773535 chrX:118378348-118378349(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PGRMC1	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART6-5p
Interactor2: PGRMC1

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg