Basic Information:

  VIRBase ID:  

VHID00313733

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART6-5p:  MIMAT0003414          GGPS1:  NM_001037277     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART6-5p	GGPS1
miRBase Accession/Entrez ID	MIMAT0003414	9453
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GGPPS//GGPPS1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GGPS1	chr1:235496635(+) A-I      intronic chr1:235496618(+) A-I      intronic chr1:235498153(+) A-I      intronic chr1:235498186(+) A-I      intronic chr1:235501057(+) A-I      intronic chr1:235501002(+) A-I      intronic chr1:235501001(+) A-I      intronic chr1:235500997(+) A-I      intronic chr1:235500991(+) A-I      intronic chr1:235496620(+) A-I      intronic chr1:235498152(+) A-I      intronic chr1:235496315(+) A-I      intronic chr1:235499847(+) A-I      intronic chr1:235496608(+) A-I      intronic chr1:235496718(+) A-I      intronic chr1:235498192(+) A-I      intronic chr1:235496734(+) A-I      intronic chr1:235496697(+) A-I      intronic chr1:235506607(+) A-I      3'UTR chr1:235496626(+) A-I      intronic chr1:235496236(+) A-I      intronic chr1:235496632(+) A-I      intronic chr1:235496732(+) A-I      intronic chr1:235499591(+) A-I      intronic chr1:235502217(+) A-I      intronic chr1:235506820(+) A-I      3'UTR chr1:235506745(+) A-I      3'UTR chr1:235496303(+) A-I      intronic chr1:235506791(+) A-I      3'UTR chr1:235496833(+) A-I      intronic chr1:235496308(+) A-I      intronic chr1:235506755(+) A-I      3'UTR chr1:235506689(+) A-I      3'UTR chr1:235496701(+) A-I      intronic chr1:235498876(+) A-I      intronic chr1:235496805(+) A-I      intronic chr1:235496737(+) A-I      intronic chr1:235498103(+) A-I      intronic chr1:235498320(+) A-I      intronic chr1:235498218(+) A-I      intronic chr1:235502106(+) A-I      intronic chr1:235506616(+) A-I      3'UTR chr1:235498313(+) A-I      intronic chr1:235498084(+) A-I      intronic chr1:235496834(+) A-I      intronic chr1:235496829(+) A-I      intronic chr1:235498219(+) A-I      intronic chr1:235496721(+) A-I      intronic chr1:235496733(+) A-I      intronic chr1:235498863(+) A-I      intronic chr1:235496763(+) A-I      intronic chr1:235496724(+) A-I      intronic chr1:235496231(+) A-I      intronic chr1:235496610(+) A-I      intronic chr1:235498319(+) A-I      intronic chr1:235498156(+) A-I      intronic chr1:235496799(+) A-I      intronic chr1:235498133(+) A-I      intronic chr1:235498178(+) A-I      intronic chr1:235501010(+) A-I      intronic chr1:235498365(+) A-I      intronic chr1:235506719(+) A-I      3'UTR chr1:235506615(+) A-I      3'UTR chr1:235496764(+) A-I      intronic chr1:235498404(+) A-I      intronic chr1:235496223(+) A-I      intronic chr1:235498262(+) A-I      intronic chr1:235498339(+) A-I      intronic chr1:235496633(+) A-I      intronic chr1:235496627(+) A-I      intronic chr1:235498122(+) A-I      intronic chr1:235496232(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GGPS1	chr1:235498313(+) A-G intron -    22484847 chr1:235498319(+) A-G intron -    22484847 chr1:235498320(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GGPS1	chr1:235491775-235491776(+) m6A 5'UTR//intron       24981863 chr1:235491809-235491810(+) m6A 5'UTR//intron       24284625//24981863//22608085 chr1:235492056-235492057(+) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr1:235492090-235492091(+) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr1:235492334-235492335(+) m6A intron       24284625//24209618//25456834//24981863//27773535//22608085 chr1:235492520-235492521(+) m6A exon//intron       24284625 chr1:235492677-235492678(+) m6A exon//intron       24284625//24209618//25456834//24981863//22608085 chr1:235492697-235492698(+) m6A exon//intron       24284625//24209618//25456834//24981863//22608085 chr1:235492708-235492709(+) m6A exon//intron       24284625//24209618//25456834//24981863//22608085 chr1:235492886-235492887(+) m6A intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:235492895-235492896(+) m6A intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:235492903-235492904(+) m6A intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:235492955-235492956(+) m6A intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:235492992-235492993(+) m6A intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:235493157-235493158(+) m6A exon//intron       24209618//24981863//22608085 chr1:235493243-235493244(+) m6A exon//intron       24981863//22608085 chr1:235493288-235493289(+) m6A exon//intron       24981863//22608085 chr1:235493331-235493332(+) m6A intron       24981863//22608085 chr1:235493444-235493445(+) m6A intron       24209618//24981863//22608085 chr1:235493496-235493497(+) m6A intron       24209618//24981863//22608085 chr1:235493508-235493509(+) m6A intron       24209618//24981863//22608085 chr1:235493598-235493599(+) m6A intron       24981863//22608085 chr1:235493808-235493809(+) m6A intron       24981863 chr1:235498588-235498589(+) m6A CDS//intron       24981863 chr1:235498597-235498598(+) m6A CDS//intron       24981863 chr1:235498620-235498621(+) m6A CDS//intron       24981863 chr1:235505386-235505387(+) m6A CDS       24284625 chr1:235505396-235505397(+) m6A CDS       24284625 chr1:235505546-235505547(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr1:235505558-235505559(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr1:235505637-235505638(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:235505645-235505646(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:235505705-235505706(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr1:235505785-235505786(+) m6A CDS       22608085 chr1:235505895-235505896(+) m6A CDS       24981863//27773535//22608085 chr1:235505902-235505903(+) m6A CDS       24981863//27773535//22608085 chr1:235506002-235506003(+) m6A CDS       24284625//22608085 chr1:235506025-235506026(+) m6A CDS       22608085 chr1:235506050-235506051(+) m6A CDS       22608085 chr1:235506187-235506188(+) m6A 3'UTR       27773535 chr1:235506336-235506337(+) m6A 3'UTR       27773535//22608085 chr1:235506397-235506398(+) m6A 3'UTR       27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GGPS1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART6-5p
Interactor2: GGPS1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg