Basic Information:

  VIRBase ID:  

VHID00313326

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART6-5p:  MIMAT0003414          RAP2A:  NM_021033     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART6-5p	RAP2A
miRBase Accession/Entrez ID	MIMAT0003414	5911
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	K-REV//KREV//RAP2//RbBP-30

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RAP2A	chr13:98114096(+) A-I      intronic chr13:98114124(+) A-I      intronic chr13:98115948(+) A-I      intronic chr13:98115943(+) A-I      intronic chr13:98115944(+) A-I      intronic chr13:98115937(+) A-I      intronic chr13:98115989(+) A-I      intronic chr13:98113962(+) A-I      intronic chr13:98115973(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RAP2A	chr13:98115937(+) A-G intron -    22484847 chr13:98115944(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RAP2A	chr13:98086836-98086837(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr13:98086893-98086894(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr13:98086929-98086930(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr13:98086998-98086999(+) m6A CDS       24284625//24209618//25456834//22575960//22608085 chr13:98087016-98087017(+) m6A CDS       24284625//25456834//22575960//22608085 chr13:98094091-98094092(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr13:98094099-98094100(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr13:98116490-98116491(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr13:98116499-98116500(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr13:98116576-98116577(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr13:98116594-98116595(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr13:98116608-98116609(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr13:98116637-98116638(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr13:98116751-98116752(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr13:98116772-98116773(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr13:98116805-98116806(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr13:98117038-98117039(+) m6A 3'UTR       24284625//24981863//22608085 chr13:98117298-98117299(+) m6A 3'UTR       24284625//24981863//22608085 chr13:98117331-98117332(+) m6A 3'UTR       24284625//24981863//22608085 chr13:98117338-98117339(+) m6A 3'UTR       24284625//22608085 chr13:98117437-98117438(+) m6A 3'UTR       22608085 chr13:98117444-98117445(+) m6A 3'UTR       22608085 chr13:98117484-98117485(+) m6A 3'UTR       22608085 chr13:98119034-98119035(+) Y 3'UTR       26075521

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RAP2A	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART6-5p
Interactor2: RAP2A

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg